CF510171

Overview
NameCF510171
Unique NameCF510171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length178
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8307 contig Csv1_Contig8307:123..300. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510171 vs. ExPASy Swiss-Prot
Match: IDND_VITVI (L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSVIVT00012394001 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 2
Query:   14 MGKGGMSQGE---KEDGEEVNMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCG 178
            MGKGG S+     KE GEE NMAAWL+G+ TLKIQP  LPSLGPYDV VR+KAVG+CG
Sbjct:    1 MGKGGNSEDAVSGKEHGEE-NMAAWLLGIKTLKIQPYILPSLGPYDVKVRIKAVGICG 57          
The following BLAST results are available for this feature:
BLAST of CF510171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IDND_VITVI6.471e-1570.69L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSV... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-686 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510171 ID=CF510171; Name=CF510171; organism=Citrus sinensis; type=EST; length=178bp
GTGAAAAGCAAATATGGGCAAGGGAGGGATGTCACAAGGAGAAAAGGAAG
ATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAACACCCTC
AAGATTCAGCCTTTGGAGCTTCCTTCTCTGGGACCTTATGATGTTTTAGT
CAGGATGAAAGCCGTTGGTGTTTGTGGA
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