CF510177

Overview
NameCF510177
Unique NameCF510177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length368
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig378 contig Csv1_Contig378:128..495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF510177 vs. ExPASy Swiss-Prot
Match: TRPD_ARATH (Anthranilate phosphoribosyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.550e-19
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 3 
Query:   75 SLGNCGFTTAGNNPRCRELTAIQTPQPAVSDNTRPQTPCFNELIDCLISRVDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAM 368
            S     F  + N       +A +   PA ++ +      FN+LI+ LI RVDL+E EA++SL++LLNEA+EALISAFLVLLRAKGET+ EIVGLARAM
Sbjct:   69 SFSRSSFACSQNLGLSGGFSAAEALPPACANASPSSIKSFNQLIETLIDRVDLSETEAESSLEFLLNEANEALISAFLVLLRAKGETYEEIVGLARAM 166
The following BLAST results are available for this feature:
BLAST of CF510177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TRPD_ARATH2.550e-1953.06Anthranilate phosphoribosyltransferase, chloroplas... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-692 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510177 ID=CF510177; Name=CF510177; organism=Citrus sinensis; type=EST; length=368bp
CGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCCATTTAATAATAATCAC
CCAAACCACCGGCCTTTCTTACCGTCGCTTGGGAACTGTGGATTTACGAC
TGCGGGTAATAATCCGAGATGCAGAGAATTAACTGCTATTCAAACCCCTC
AGCCGGCTGTTTCTGATAATACTCGTCCTCAAACGCCCTGCTTTAATGAG
TTGATCGATTGCTTGATAAGTCGAGTGGATTTAACGGAGGCGGAGGCTCA
AGCTTCGCTGGATTACTTGTTGAATGAAGCTGATGAGGCCTTGATTAGTG
CTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAACATTTGGAGAGATTGTG
GGATTGGCCAGGGCGATG
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