CF510178

Overview
NameCF510178
Unique NameCF510178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig955 contig Csv1_Contig955:1..389. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: DMC1_SOYBN (Meiotic recombination protein DMC1 homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 3.656e-66
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQM 387
            A TEAFGEFRSGKTQLAHTLCV TQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDF+GRGELADRQQKL QM
Sbjct:  128 AITEAFGEFRSGKTQLAHTLCVSTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFSGRGELADRQQKLAQM 255          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: DMC1_ARATH (Meiotic recombination protein DMC1 homolog OS=Arabidopsis thaliana GN=LIM15 PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 6.237e-66
Identity = 122/128 (95.31%), Postives = 125/128 (97.66%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQM 387
            A TEAFGEFRSGKTQLAHTLCV TQLPTNM+GGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFR+LIVDS+IALFRVDFTGRGELADRQQKL QM
Sbjct:  127 AITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQM 254          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: DMC1_LILLO (Meiotic recombination protein DMC1 homolog OS=Lilium longiflorum GN=LIM15 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 4.625e-61
Identity = 115/126 (91.27%), Postives = 119/126 (94.44%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQM 387
            TEAFGEFRSGKTQ+AHTLCV TQLP +M GGNGKVAYIDTEGTFRPDRIVPIAERFGMD  AVLDNIIYARAYTYEHQYNLLL LAAKMSEEPFRLLIVDSVIALFRVDF+GRGELA+RQQKL QM
Sbjct:  134 TEAFGEFRSGKTQIAHTLCVSTQLPVSMHGGNGKVAYIDTEGTFRPDRIVPIAERFGMDASAVLDNIIYARAYTYEHQYNLLLALAAKMSEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQM 259          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: DMC1_MOUSE (Meiotic recombination protein DMC1/LIM15 homolog OS=Mus musculus GN=Dmc1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.399e-41
Identity = 86/130 (66.15%), Postives = 102/130 (78.46%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEP--FRLLIVDSVIALFRVDFTGRGELADRQQKLGQM 387
            A TEAFGEFR+GKTQL+HTLCV  QLP       GK+ +IDTE TFRPDR+  IA+RF +D  AVLDN++YARAYT EHQ  LL  +AAK  EE   F+LLI+DS++ALFRVDF+GRGELA+RQQKL QM
Sbjct:  120 AITEAFGEFRTGKTQLSHTLCVTAQLPGTGGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHEAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQM 249          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: DLH1_CANAL (Meiotic recombination protein DLH1 OS=Candida albicans GN=DLH1 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.386e-41
Identity = 83/125 (66.40%), Postives = 97/125 (77.60%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            TE FGEFR GKTQL HTLCV  QLPT+M GG G+VAYIDTEGTFRPDRI  IAER+G+D    L+NI YARA   EHQ  L+  L  +++E  FRLLIVDS++A FRVD++GRGEL +RQQKL Q
Sbjct:  108 TEVFGEFRCGKTQLCHTLCVAAQLPTDMGGGEGRVAYIDTEGTFRPDRIRSIAERYGVDADICLENISYARALNSEHQIELVEQLGNELAEGTFRLLIVDSIMACFRVDYSGRGELNERQQKLNQ 232          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: DMC1_HUMAN (Meiotic recombination protein DMC1/LIM15 homolog OS=Homo sapiens GN=DMC1 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.117e-41
Identity = 86/130 (66.15%), Postives = 102/130 (78.46%), Query Frame = 1
Query:    4 ATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEP--FRLLIVDSVIALFRVDFTGRGELADRQQKLGQM 387
            A TEAFGEFR+GKTQL+HTLCV  QLP       GK+ +IDTE TFRPDR+  IA+RF +D  AVLDN++YARAYT EHQ  LL  +AAK  EE   F+LLI+DS++ALFRVDF+GRGELA+RQQKL QM
Sbjct:  120 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQM 249          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: DMC1_YEAST (Meiotic recombination protein DMC1 OS=Saccharomyces cerevisiae GN=DMC1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.488e-39
Identity = 77/125 (61.60%), Postives = 95/125 (76.00%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            TE FGEFR GKTQ++HTLCV TQLP  M GG GKVAYIDTEGTFRP+RI  IAE + +DP + L N+ YARA   EHQ  L+  L  ++S   +RL++VDS++A FRVD+ GRGEL++RQQKL Q
Sbjct:  117 TEVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKVAYIDTEGTFRPERIKQIAEGYELDPESCLANVSYARALNSEHQMELVEQLGEELSSGDYRLIVVDSIMANFRVDYCGRGELSERQQKLNQ 241          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: DMC1_SCHPO (Meiotic recombination protein dmc1 OS=Schizosaccharomyces pombe GN=dmc1 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 5.502e-38
Identity = 78/127 (61.42%), Postives = 96/127 (75.59%), Query Frame = 1
Query:   10 TEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEE-PFRLLIVDSVIALFRVDFTGRGELADRQQKLGQM 387
            TE FGEFR GKTQ++HTLCV  QLP +M G  GKVA+IDTEGTFRPDRI  IAERFG+D    ++NII +RAY  E Q   +  L    +E+  +RLLIVDS++ALFRVD++GRGEL++RQQKL  M
Sbjct:  116 TEVFGEFRCGKTQMSHTLCVTAQLPRDMGGAEGKVAFIDTEGTFRPDRIKAIAERFGVDADQAMENIIVSRAYNSEQQMEYITKLGTIFAEDGQYRLLIVDSIMALFRVDYSGRGELSERQQKLNIM 242          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_YEAST (DNA repair protein RAD51 OS=Saccharomyces cerevisiae GN=RAD51 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.226e-37
Identity = 75/128 (58.59%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE FGEFR+GK+QL HTL V  Q+P ++ GG GK  YIDTEGTFRP R+V IA+RFG+DP   L+N+ YARAY  +HQ  LL   A  MSE  F L++VDSV+AL+R DF+GRGEL+ RQ  L +
Sbjct:  178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAK 305          
BLAST of CF510178 vs. ExPASy Swiss-Prot
Match: RAD51_ARATH (DNA repair protein RAD51 homolog 1 OS=Arabidopsis thaliana GN=RAD51 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.601e-37
Identity = 76/128 (59.38%), Postives = 92/128 (71.88%), Query Frame = 1
Query:    1 GATTEAFGEFRSGKTQLAHTLCVCTQLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLGQ 384
            G+ TE +GEFRSGKTQL HTLCV  QLP +  GG GK  YID EGTFRP R++ IA+RFG++   VL+N+ YARAY  +HQ  LLL  A+ M E  F LLIVDS  AL+R DF+GRGEL+ RQ  L +
Sbjct:  123 GSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMIETRFALLIVDSATALYRTDFSGRGELSARQMHLAK 250          
The following BLAST results are available for this feature:
BLAST of CF510178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
DMC1_SOYBN3.656e-6696.88Meiotic recombination protein DMC1 homolog OS=Glyc... [more]
DMC1_ARATH6.237e-6695.31Meiotic recombination protein DMC1 homolog OS=Arab... [more]
DMC1_LILLO4.625e-6191.27Meiotic recombination protein DMC1 homolog OS=Lili... [more]
DMC1_MOUSE1.399e-4166.15Meiotic recombination protein DMC1/LIM15 homolog O... [more]
DLH1_CANAL2.386e-4166.40Meiotic recombination protein DLH1 OS=Candida albi... [more]
DMC1_HUMAN3.117e-4166.15Meiotic recombination protein DMC1/LIM15 homolog O... [more]
DMC1_YEAST8.488e-3961.60Meiotic recombination protein DMC1 OS=Saccharomyce... [more]
DMC1_SCHPO5.502e-3861.42Meiotic recombination protein dmc1 OS=Schizosaccha... [more]
RAD51_YEAST1.226e-3758.59DNA repair protein RAD51 OS=Saccharomyces cerevisi... [more]
RAD51_ARATH1.601e-3759.38DNA repair protein RAD51 homolog 1 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-693 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510178 ID=CF510178; Name=CF510178; organism=Citrus sinensis; type=EST; length=389bp
GGAGCCACCACAGAAGCTTTTGGGGAGTTCCGGTCTGGGAAAACACAGCT
TGCTCATACCCTATGCGTTTGCACGCAGCTTCCTACAAATATGCGGGGTG
GGAATGGGAAGGTTGCTTACATTGACACTGAAGGAACTTTCCGCCCTGAT
AGGATTGTACCCATAGCTGAAAGATTTGGAATGGACCCAGGAGCTGTCCT
TGACAATATCATTTATGCTCGTGCGTACACATATGAGCATCAGTACAACC
TACTTCTTGGTCTGGCAGCAAAAATGTCTGAAGAACCATTCAGACTTCTG
ATTGTGGATTCAGTGATTGCCCTCTTTCGAGTAGATTTCACAGGAAGAGG
AGAACTTGCAGATCGACAGCAAAAATTGGGACAAATGCT
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