CF510192

Overview
NameCF510192
Unique NameCF510192
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length212
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13560 contig Csv1_Contig13560:379..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510192 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.212e-30
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 2
Query:    2 ELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFL 211
            ELQAKEAEL+RREQD++RKE+AAARAGIV+E KNWPPFFP+IHHDIANEIP+HLQRLQYV FATYLGL L
Sbjct:   67 ELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPVHLQRLQYVTFATYLGLVL 136          
BLAST of CF510192 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.746e-28
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 2
Query:    2 ELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFL 211
            +LQAKEAELR+REQ+VRRKEEA ARAGIV+EEKNWPPFFPIIHHDI NEIPIHL+ LQYVAF + LGL L
Sbjct:   66 DLQAKEAELRKREQEVRRKEEAIARAGIVIEEKNWPPFFPIIHHDITNEIPIHLRTLQYVAFFSLLGLVL 135          
BLAST of CF510192 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.545e-27
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = 2
Query:    2 ELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFL 211
            ELQAKEA+LRRREQD++RK++AAARAGIV+E KNWP FFP+IHHDIANEI + LQRLQY+AFATYLGL L
Sbjct:   69 ELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWPTFFPLIHHDIANEILVRLQRLQYIAFATYLGLVL 138          
BLAST of CF510192 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 54/68 (79.41%), Postives = 65/68 (95.59%), Query Frame = 2
Query:    2 ELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGL 205
            ELQAKEAEL +RE ++RR+EEAA+RAGIV+EEKNWPPFFPIIHHDI+NEIPIHLQR+QY+AF++ LGL
Sbjct:   64 ELQAKEAELNKRESELRRREEAASRAGIVIEEKNWPPFFPIIHHDISNEIPIHLQRMQYLAFSSLLGL 131          
BLAST of CF510192 vs. ExPASy Swiss-Prot
Match: SCAM4_ORYSJ (Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 2
Query:    2 ELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFL 211
            EL AKEAEL RRE++++R+EEAAARAGIVLE+KNWPPFFPIIH+DI NEIP+HLQR QYVAFA+ LGL L
Sbjct:   91 ELLAKEAELNRREKEIKRREEAAARAGIVLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVL 160          
BLAST of CF510192 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.649e-26
Identity = 52/68 (76.47%), Postives = 64/68 (94.12%), Query Frame = 2
Query:    2 ELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGL 205
            EL+ KEAEL+RREQ+++RKE+A A+AGIV+EEKNWPPFFP+IHHDI+NEIPIHLQR+QYVAF + LGL
Sbjct:   60 ELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQRIQYVAFTSMLGL 127          
BLAST of CF510192 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSJ (Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.154e-26
Identity = 52/68 (76.47%), Postives = 64/68 (94.12%), Query Frame = 2
Query:    2 ELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGL 205
            ELQA+EAEL +RE++++R+EEAAARAGIV+EEKNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL
Sbjct:   84 ELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGL 151          
BLAST of CF510192 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.154e-26
Identity = 52/68 (76.47%), Postives = 64/68 (94.12%), Query Frame = 2
Query:    2 ELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGL 205
            ELQA+EAEL +RE++++R+EEAAARAGIV+EEKNWPPF P+IHHDI NEIP HLQR+QYVAFA++LGL
Sbjct:   84 ELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGL 151          
BLAST of CF510192 vs. ExPASy Swiss-Prot
Match: SCAM3_ORYSJ (Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.186e-26
Identity = 50/68 (73.53%), Postives = 66/68 (97.06%), Query Frame = 2
Query:    2 ELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGL 205
            ELQA EAEL +RE++++RKEEAAA+AGIV+E+KNWPPFFP+IHH+I+NEIPIHLQR+QY+AF+++LGL
Sbjct:   60 ELQAMEAELNKRERELKRKEEAAAQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLAFSSFLGL 127          
BLAST of CF510192 vs. ExPASy Swiss-Prot
Match: SCAM2_ARATH (Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.051e-25
Identity = 49/68 (72.06%), Postives = 61/68 (89.71%), Query Frame = 2
Query:    2 ELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGL 205
            ELQAKE EL+R+EQ+++R+E+A AR G+V+EEKNWP FFP+IHHDI NEIPIHLQ++QYVAF T LGL
Sbjct:   61 ELQAKENELKRKEQELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGL 128          
The following BLAST results are available for this feature:
BLAST of CF510192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SCAM3_ARATH3.212e-3085.71Secretory carrier-associated membrane protein 3 OS... [more]
SCAM_PEA8.746e-2882.86Secretory carrier-associated membrane protein OS=P... [more]
SCAM5_ARATH2.545e-2780.00Secretory carrier-associated membrane protein 5 OS... [more]
SCAM2_ORYSJ3.323e-2779.41Secretory carrier-associated membrane protein 2 OS... [more]
SCAM4_ORYSJ1.263e-2678.57Secretory carrier-associated membrane protein 4 OS... [more]
SCAM1_ARATH1.649e-2676.47Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSJ2.154e-2676.47Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSI2.154e-2676.47Putative secretory carrier-associated membrane pro... [more]
SCAM3_ORYSJ8.186e-2673.53Secretory carrier-associated membrane protein 3 OS... [more]
SCAM2_ARATH9.051e-2572.06Secretory carrier-associated membrane protein 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-707 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510192 ID=CF510192; Name=CF510192; organism=Citrus sinensis; type=EST; length=212bp
GGAACTTCAAGCTAAGGAGGCTGAATTAAGAAGGCGGGAGCAGGATGTAA
GAAGGAAAGAAGAAGCTGCAGCACGAGCTGGAATTGTTCTTGAGGAGAAA
AACTGGCCACCATTTTTCCCCATTATTCATCATGACATTGCAAACGAAAT
ACCAATTCATCTACAAAGGCTGCAATATGTTGCATTTGCAACATATTTAG
GATTGTTTTTGT
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