CF510195

Overview
NameCF510195
Unique NameCF510195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length338
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510195 vs. ExPASy Swiss-Prot
Match: WRK44_ARATH (WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.991e-15
Identity = 37/53 (69.81%), Postives = 40/53 (75.47%), Query Frame = 3
Query:  192 RSYYRCTNPKCKVRKHVERASDDPRAFITTYEGKHNHEM----PLRSTTPVTS 338
            RSYYRCT+  C+ RKHVERASDDPRAFITTYEGKHNH +    P  ST P  S
Sbjct:  369 RSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHHLLLSPPSSSTLPFNS 421          
BLAST of CF510195 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.097e-13
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  192 RSYYRCTNPKCKVRKHVERASDDPRAFITTYEGKHNHEMPLRSTT 326
            RSYY+CT P C VRKHVERA+ DP+A +TTYEGKHNH++P   T+
Sbjct:  435 RSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTS 479          
BLAST of CF510195 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.672e-13
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:  192 RSYYRCTNPKCKVRKHVERASDDPRAFITTYEGKHNHEMP 311
            RSYY+CT P C VRKHVERA+ DP+A +TTYEGKHNH++P
Sbjct:  429 RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 468          
BLAST of CF510195 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.969e-13
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 3
Query:  192 RSYYRCTNPKCKVRKHVERASDDPRAFITTYEGKHNHEMP 311
            RSYY+CT P C VRKHVERAS D +A ITTYEGKHNH++P
Sbjct:  326 RSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVP 365          
BLAST of CF510195 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.811e-12
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 3
Query:  192 RSYYRCTNPKCKVRKHVERASDDPRAFITTYEGKHNHEMP 311
            RSYY+CT P C VRKHVERAS D ++ ITTYEGKHNH++P
Sbjct:  507 RSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVP 546          
BLAST of CF510195 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.151e-11
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 3
Query:  192 RSYYRCTNPKCKVRKHVERASDDPRAFITTYEGKHNHEMP 311
            RSYY+CT   C VRKHVERAS D RA ITTYEGKHNH++P
Sbjct:  382 RSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHNHDVP 421          
BLAST of CF510195 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.151e-11
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 3
Query:  192 RSYYRCTNPKCKVRKHVERASDDPRAFITTYEGKHNHEMP 311
            RSYY+CT   C VRKHVERAS DP+A ITTYEGKH+H++P
Sbjct:  401 RSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVP 440          
BLAST of CF510195 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.563e-11
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 3
Query:  192 RSYYRCTNPKCKVRKHVERASDDPRAFITTYEGKHNHEMP 311
            RSYYRC++P C V+KHVER+S D +  ITTYEGKH+H+MP
Sbjct:  327 RSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 366          
BLAST of CF510195 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.459e-11
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 3
Query:  192 RSYYRCTNPKCKVRKHVERASDDPRAFITTYEGKHNHEMPLRSTTPV 332
            RSYY+CT   C VRKHVERA  DP++ ITTYEGKH H++P     PV
Sbjct:  254 RSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTPRRGPV 300          
The following BLAST results are available for this feature:
BLAST of CF510195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
WRK44_ARATH4.991e-1569.81WRKY transcription factor 44 OS=Arabidopsis thalia... [more]
WRKY3_ARATH2.097e-1366.67Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRKY4_ARATH4.672e-1372.50Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRK58_ARATH7.969e-1375.00Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRKY2_ARATH8.811e-1272.50Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK33_ARATH1.151e-1175.00Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRK20_ARATH1.151e-1172.50Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRKY1_ARATH2.563e-1167.50WRKY transcription factor 1 OS=Arabidopsis thalian... [more]
WRK26_ARATH7.459e-1161.70Probable WRKY transcription factor 26 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-710 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510195 ID=CF510195; Name=CF510195; organism=Citrus sinensis; type=EST; length=338bp
AAAGTGCAAATTCCTGCCCAAGGTCTATGAATGTTACTGTTGACCTCTCT
TTAGGATTCGACAGTTGATTAATCTTCAATGGAATTGGAGATTTAGTATC
GTTTGAGACCCAGAATTGGTCTAGTATATATATTTATATGGTTCCCTCTT
TTTTCTCAGATTTTCCCTTAGCTTGTTTTGATCTATCTTGCAGAAGTTAC
TATAGATGTACAAATCCTAAATGCAAAGTGCGCAAGCACGTGGAACGAGC
ATCGGATGATCCAAGAGCTTTTATTACAACATATGAGGGAAAACACAACC
ATGAGATGCCTTTAAGGAGCACAACTCCAGTGACATCT
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