CF510196

Overview
NameCF510196
Unique NameCF510196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510196 vs. ExPASy Swiss-Prot
Match: Y4361_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.152e-11
Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:    6 GPLSGKISRLSSLEILNMSSNFLNGSVPXXXXXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVP 305
            G +   IS LS+L  LN+S N  +G +P               +  ++G VP  L  LP + V++L+ N F+G +P+ FS L +LR + LS+N F GE+P
Sbjct:  466 GAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIP 565          
BLAST of CF510196 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.152e-11
Identity = 37/101 (36.63%), Postives = 54/101 (53.47%), Query Frame = 3
Query:    6 GPLSGKISRLSSLEILNMSSNFLNGSVPXXXXXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPD 308
            GP+  +IS    L++LN+S+N L G +P                N L G++PD LG L  L  L L  N FNG +P S  +  NL++L LS+N+  G +P+
Sbjct:  505 GPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPE 605          
BLAST of CF510196 vs. ExPASy Swiss-Prot
Match: Y3475_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.566e-11
Identity = 39/100 (39.00%), Postives = 50/100 (50.00%), Query Frame = 3
Query:    6 GPLSGKISRLSSLEILNMSSNFLNGSVPXXXXXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVP 305
            G +  ++ +LS LE L+M  N+L G +P              D N L G VP  LGSL  L  L+L  N   G LP S   L  L  LALS+N+  GE+P
Sbjct:  104 GTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIP 203          
BLAST of CF510196 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.376e-11
Identity = 33/100 (33.00%), Postives = 52/100 (52.00%), Query Frame = 3
Query:    6 GPLSGKISRLSSLEILNMSSNFLNGSVPXXXXXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVP 305
            G LS ++  L +L+ L +  N + G +P              ++N L GR+P  +G+L  L  L+L  N  NGT+P+S + L NL  L L +N   G++P
Sbjct:   84 GTLSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQFLTLSRNKLNGTIPESLTGLPNLLNLLLDSNSLSGQIP 183          
BLAST of CF510196 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.715e-11
Identity = 33/100 (33.00%), Postives = 53/100 (53.00%), Query Frame = 3
Query:    6 GPLSGKISRLSSLEILNMSSNFLNGSVPXXXXXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVP 305
            G +   +  L +L+ L++S+N  NG +P                NM++G +P  +G L  L  L+L +N   G LP + + L NL V++L NN+F GE+P
Sbjct:   80 GSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNLLTLNLSDNALAGKLPTNLASLRNLTVVSLENNYFSGEIP 179          
BLAST of CF510196 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11
Identity = 37/100 (37.00%), Postives = 49/100 (49.00%), Query Frame = 3
Query:    6 GPLSGKISRLSSLEILNMSSNFLNGSVPXXXXXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVP 305
            G +    S L SL++L+ SSN L+GS+P                N L+G VP+ +G LP L  L L NN F G LP        L  + +SNN F G +P
Sbjct:  287 GEIPESYSNLKSLKLLDFSSNQLSGSIPSGFSTLKNLTWLSLISNNLSGEVPEGIGELPELTTLFLWNNNFTGVLPHKLGSNGKLETMDVSNNSFTGTIP 386          
The following BLAST results are available for this feature:
BLAST of CF510196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y4361_ARATH1.152e-1136.00Probable LRR receptor-like serine/threonine-protei... [more]
RCH1_ARATH1.152e-1136.63LRR receptor-like serine/threonine-protein kinase ... [more]
Y3475_ARATH2.566e-1139.00Probable LRR receptor-like serine/threonine-protei... [more]
Y5129_ARATH4.376e-1133.00Probable LRR receptor-like serine/threonine-protei... [more]
Y4372_ARATH5.715e-1133.00Probable LRR receptor-like serine/threonine-protei... [more]
Y5148_ARATH7.465e-1137.00Probable leucine-rich repeat receptor-like protein... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-711 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510196 ID=CF510196; Name=CF510196; organism=Citrus sinensis; type=EST; length=308bp
TATGGGGTCCCTTGTCTGGTAAAATTTCACGTTTATCGTCACTGGAAATA
CTTAATATGAGCTCAAATTTCCTGAATGGTTCTGTACCTCAGGAGCTTTC
AATTTTAACTAGCCTTCAAACACTTATACTTGATGAAAACATGCTTGCTG
GTCGGGTTCCAGATTGGTTGGGTTCATTACCGATTTTGGCTGTTTTGAGC
TTGAGGAATAATATGTTCAATGGGACTTTGCCTGATTCGTTTAGTTACTT
GGAGAATCTTAGAGTTCTTGCGCTTTCAAACAATCACTTTTACGGAGAAG
TTCCTGAC
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