CF510206

Overview
NameCF510206
Unique NameCF510206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length182
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10798 contig Csv1_Contig10798:572..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510206 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.373e-18
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 103
            FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI
Sbjct:  145 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 178          

HSP 2 Score: 40.817 bits (94), Expect = 1.373e-18
Identity = 17/18 (94.44%), Postives = 17/18 (94.44%), Query Frame = 1
Query:  127 ITKLLNHNITPCLPLRGT 180
            ITK LNHNITPCLPLRGT
Sbjct:  186 ITKFLNHNITPCLPLRGT 203          
BLAST of CF510206 vs. ExPASy Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.925e-18
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 103
            FGNGTES+HTLPHSATRAAMLVR+NTLLQGYSGI
Sbjct:  137 FGNGTESTHTLPHSATRAAMLVRINTLLQGYSGI 170          

HSP 2 Score: 40.817 bits (94), Expect = 3.925e-18
Identity = 17/18 (94.44%), Postives = 17/18 (94.44%), Query Frame = 1
Query:  127 ITKLLNHNITPCLPLRGT 180
            ITK LNHNITPCLPLRGT
Sbjct:  178 ITKFLNHNITPCLPLRGT 195          
BLAST of CF510206 vs. ExPASy Swiss-Prot
Match: PAL5_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL5 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.121e-17
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 103
            FGNGTESSHTLPHSATRAAMLVR+NTLLQGYSGI
Sbjct:  146 FGNGTESSHTLPHSATRAAMLVRINTLLQGYSGI 179          

HSP 2 Score: 38.1206 bits (87), Expect = 1.121e-17
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 1
Query:  127 ITKLLNHNITPCLPLRGT 180
            ITKL+N NITPCLPLRGT
Sbjct:  187 ITKLINSNITPCLPLRGT 204          
BLAST of CF510206 vs. ExPASy Swiss-Prot
Match: PAL1_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=PAL PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.122e-17
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 2
Query:    2 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 103
            FGN TES HTLPHSATRAAMLVR+NTLLQGYSGI
Sbjct:  131 FGNATESCHTLPHSATRAAMLVRINTLLQGYSGI 164          

HSP 2 Score: 42.3578 bits (98), Expect = 1.122e-17
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 1
Query:  127 ITKLLNHNITPCLPLRGT 180
            ITKLLNHNITPCLPLRGT
Sbjct:  172 ITKLLNHNITPCLPLRGT 189          
BLAST of CF510206 vs. ExPASy Swiss-Prot
Match: PALY_HELAN (Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.123e-17
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 103
            FGNGTESSHTLPHSATRAAMLVR+NTLLQGYSGI
Sbjct:  136 FGNGTESSHTLPHSATRAAMLVRINTLLQGYSGI 169          

HSP 2 Score: 38.1206 bits (87), Expect = 1.123e-17
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 1
Query:  127 ITKLLNHNITPCLPLRGT 180
            ITK LN+NITPCLPLRGT
Sbjct:  177 ITKFLNNNITPCLPLRGT 194          
BLAST of CF510206 vs. ExPASy Swiss-Prot
Match: PALY_TRISU (Phenylalanine ammonia-lyase OS=Trifolium subterraneum GN=PAL1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.895e-17
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 103
            FGNGTES+HTLPH+ATRAAMLVR+NTLLQGYSGI
Sbjct:  150 FGNGTESNHTLPHTATRAAMLVRINTLLQGYSGI 183          

HSP 2 Score: 39.6614 bits (91), Expect = 1.895e-17
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 1
Query:  127 ITKLLNHNITPCLPLRGT 180
            ITKLLN+NITPCLPLRGT
Sbjct:  191 ITKLLNNNITPCLPLRGT 208          
BLAST of CF510206 vs. ExPASy Swiss-Prot
Match: PAL1_SOLTU (Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum GN=PAL-1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.464e-17
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 103
            FGNGTES+HTLPHSATRAAMLVR+NTLLQGYSGI
Sbjct:  145 FGNGTESTHTLPHSATRAAMLVRINTLLQGYSGI 178          

HSP 2 Score: 38.1206 bits (87), Expect = 2.464e-17
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 1
Query:  127 ITKLLNHNITPCLPLRGT 180
            ITKL+N NITPCLPLRGT
Sbjct:  186 ITKLINSNITPCLPLRGT 203          
BLAST of CF510206 vs. ExPASy Swiss-Prot
Match: PAL1_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.464e-17
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 2
Query:    2 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 103
            FGNGTE+SHTLPHSATRAAMLVR+NTLLQGYSGI
Sbjct:  140 FGNGTETSHTLPHSATRAAMLVRINTLLQGYSGI 173          

HSP 2 Score: 38.1206 bits (87), Expect = 2.464e-17
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 1
Query:  127 ITKLLNHNITPCLPLRGT 180
            ITKL+N NITPCLPLRGT
Sbjct:  181 ITKLINSNITPCLPLRGT 198          
BLAST of CF510206 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.203e-17
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 2
Query:    2 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 103
            FGNGTESSHTLP SATRAAMLVR NTLLQGYSGI
Sbjct:  136 FGNGTESSHTLPRSATRAAMLVRTNTLLQGYSGI 169          

HSP 2 Score: 40.817 bits (94), Expect = 3.203e-17
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 1
Query:  127 ITKLLNHNITPCLPLRGT 180
            ITK++NHNITPCLPLRGT
Sbjct:  177 ITKMINHNITPCLPLRGT 194          
BLAST of CF510206 vs. ExPASy Swiss-Prot
Match: PAL2_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.165e-17
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 2
Query:    2 FGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGI 103
            FG GT +SHTLPHSATRAAMLVR+NTLLQGYSGI
Sbjct:  133 FGTGTGASHTLPHSATRAAMLVRINTLLQGYSGI 166          

HSP 2 Score: 42.3578 bits (98), Expect = 4.165e-17
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 1
Query:  127 ITKLLNHNITPCLPLRGT 180
            ITKLLNHNITPCLPLRGT
Sbjct:  174 ITKLLNHNITPCLPLRGT 191          
The following BLAST results are available for this feature:
BLAST of CF510206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PALY_CITLI1.373e-18100.00Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PALY_DIGLA3.925e-1894.12Phenylalanine ammonia-lyase OS=Digitalis lanata PE... [more]
PAL5_SOLLC1.121e-1797.06Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PAL1_IPOBA1.122e-1791.18Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=... [more]
PALY_HELAN1.123e-1797.06Phenylalanine ammonia-lyase OS=Helianthus annuus G... [more]
PALY_TRISU1.895e-1791.18Phenylalanine ammonia-lyase OS=Trifolium subterran... [more]
PAL1_SOLTU2.464e-1794.12Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... [more]
PAL1_TOBAC2.464e-1794.12Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PAL2_POPKI3.203e-1794.12Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PAL2_IPOBA4.165e-1788.24Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-721 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510206 ID=CF510206; Name=CF510206; organism=Citrus sinensis; type=EST; length=182bp
CTTTGGAAACGGAACAGAGTCATCTCACACGCTACCTCACTCAGCAACAA
GGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCAGGGCTACTCCGGC
ATCCCGATTTGAAATCCTGGAAGCCGATCACAAAGCTGCTCAATCACAAC
ATCACTCCATGCCTCCCTCTTCGCGGCACAAT
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