CF510209

Overview
NameCF510209
Unique NameCF510209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length225
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:19..243. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS143_ARATH (40S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.094e-23
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 3
Query:   54 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            MS+RKT+EPK ENVTLGPAVR+GE VFGV H+FASFNDTFIHVTDLSGRETLVRITG
Sbjct:    1 MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITG 57          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS142_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.135e-22
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 3
Query:   60 RRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            R+KTREPKEENV LGPAVR+GEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG
Sbjct:    4 RKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 57          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS141_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.482e-22
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 3
Query:   54 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            MSRRKTREPKEENV LGP VR+GE VFGVAHIFASFNDTFIHVTDLSGRETLVRITG
Sbjct:    1 MSRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 56          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_LUPLU (40S ribosomal protein S14 OS=Lupinus luteus GN=RPS14 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.528e-22
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 3
Query:   54 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            MSRRK R+ KEE VTLGPAV DGEHVFGVA IFASFNDTFIHVTDLSGRETLVRITG
Sbjct:    1 MSRRKVRDTKEETVTLGPAVSDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITG 57          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS142_ARATH (40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.312e-22
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 3
Query:   54 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            MS+RKT+EPK E VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLSGRETLVRITG
Sbjct:    1 MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITG 57          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS141_ARATH (40S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.140e-21
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 3
Query:   54 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            MS+RKT+EPK + VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLSGRETLVRITG
Sbjct:    1 MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITG 57          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_PODCA (40S ribosomal protein S14 OS=Podocoryne carnea GN=RPS14 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.436e-17
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 3
Query:   54 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            M+ RK + PKEE V +LGP V DGE+VFGVAHIFASFNDTF+HVTDLSG+ET+ R+TG
Sbjct:    1 MAPRKGKAPKEEQVISLGPQVADGENVFGVAHIFASFNDTFVHVTDLSGKETIARVTG 58          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_CHLRE (40S ribosomal protein S14 OS=Chlamydomonas reinhardtii GN=RPS14 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.455e-17
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 3
Query:   66 KTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            K  E  +E V+LGP VR+GEHVFGVAHIFASFNDTF+HVTDLSGRET+ R+TG
Sbjct:    8 KGDEAPKEVVSLGPTVREGEHVFGVAHIFASFNDTFVHVTDLSGRETISRVTG 60          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14_DROME (40S ribosomal protein S14 OS=Drosophila melanogaster GN=RpS14a PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.305e-17
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 3
Query:   54 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            M+ RK +  KEE  V LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSGRET+ R+TG
Sbjct:    1 MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTG 58          
BLAST of CF510209 vs. ExPASy Swiss-Prot
Match: RS14A_DROYA (40S ribosomal protein S14a OS=Drosophila yakuba GN=RpS14a PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.305e-17
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 3
Query:   54 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 224
            M+ RK +  KEE  V LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSGRET+ R+TG
Sbjct:    1 MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTG 58          
The following BLAST results are available for this feature:
BLAST of CF510209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS143_ARATH5.094e-2387.7240S ribosomal protein S14-3 OS=Arabidopsis thalian... [more]
RS142_MAIZE1.135e-2294.5540S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS141_MAIZE1.482e-2292.9840S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS14_LUPLU2.528e-2289.4740S ribosomal protein S14 OS=Lupinus luteus GN=RPS... [more]
RS142_ARATH4.312e-2285.9640S ribosomal protein S14-2 OS=Arabidopsis thalian... [more]
RS141_ARATH2.140e-2184.2140S ribosomal protein S14-1 OS=Arabidopsis thalian... [more]
RS14_PODCA1.436e-1772.4140S ribosomal protein S14 OS=Podocoryne carnea GN=... [more]
RS14_CHLRE5.455e-1775.4740S ribosomal protein S14 OS=Chlamydomonas reinhar... [more]
RS14_DROME9.305e-1772.4140S ribosomal protein S14 OS=Drosophila melanogast... [more]
RS14A_DROYA9.305e-1772.4140S ribosomal protein S14a OS=Drosophila yakuba GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-724 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510209 ID=CF510209; Name=CF510209; organism=Citrus sinensis; type=EST; length=225bp
CTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTCCGTGTCATCAGCA
GCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAATGTTACTCT
TGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGCGTTGCCCACATTT
TTGCGTCGTTTAATGACACTTTCATTCATGTGACTGACTTGTCTGGAAGA
GAAACTCTTGTGCGCATTACTGGGG
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