CF510215

Overview
NameCF510215
Unique NameCF510215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig956 contig Csv1_Contig956:1..374. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510215 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 8.328e-55
Identity = 94/106 (88.68%), Postives = 104/106 (98.11%), Query Frame = 1
Query:   55 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFK 372
            MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFK
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFK 106          
BLAST of CF510215 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 8.328e-55
Identity = 94/106 (88.68%), Postives = 104/106 (98.11%), Query Frame = 1
Query:   55 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFK 372
            MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFK
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFK 106          
BLAST of CF510215 vs. ExPASy Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.886e-36
Identity = 71/105 (67.62%), Postives = 84/105 (80.00%), Query Frame = 1
Query:   55 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEF 369
            MP  +G R+RTR LFAR F+  G + LSTYL  +KIG+YVDV  N AVHKGMP K+YHGRTG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F
Sbjct:    1 MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGRTGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSF 105          
BLAST of CF510215 vs. ExPASy Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.658e-36
Identity = 68/99 (68.69%), Postives = 81/99 (81.82%), Query Frame = 1
Query:   55 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPS 351
            MP   GLR+RTR LF+R FR  G +  +T+LRT+++GDYVD+K  G VHKGMPHKFYHGRTGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS
Sbjct:    1 MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGRTGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPS 99          
BLAST of CF510215 vs. ExPASy Swiss-Prot
Match: RL21B_SCHPO (60S ribosomal protein L21-B OS=Schizosaccharomyces pombe GN=rpl21b PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 8.104e-34
Identity = 64/105 (60.95%), Postives = 86/105 (81.90%), Query Frame = 1
Query:   55 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEF 369
            MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+TG V+NVT+ ++GV I K VGNR ++KR++VR+EHV+ S+C ++F
Sbjct:    1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDF 105          
BLAST of CF510215 vs. ExPASy Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae GN=RPL21A PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.104e-34
Identity = 63/105 (60.00%), Postives = 83/105 (79.05%), Query Frame = 1
Query:   55 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEF 369
            M   HG RSRTR +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF
Sbjct:    1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEF 105          
BLAST of CF510215 vs. ExPASy Swiss-Prot
Match: RL21A_SCHPO (60S ribosomal protein L21-A OS=Schizosaccharomyces pombe GN=rpl21a PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.104e-34
Identity = 64/105 (60.95%), Postives = 86/105 (81.90%), Query Frame = 1
Query:   55 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEF 369
            MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+TG V+NVT+ ++GV I K VGNR ++KR++VR+EHV+ S+C ++F
Sbjct:    1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDF 105          
BLAST of CF510215 vs. ExPASy Swiss-Prot
Match: RL21B_YEAST (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae GN=RPL21B PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.805e-33
Identity = 62/105 (59.05%), Postives = 83/105 (79.05%), Query Frame = 1
Query:   55 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEF 369
            M   HG RSRTR +F R FRK G + +STYL+ YK+GD VD+K NG++ KGMPHKFY G+TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF
Sbjct:    1 MGKSHGYRSRTRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEF 105          
BLAST of CF510215 vs. ExPASy Swiss-Prot
Match: RL21_HUMAN (60S ribosomal protein L21 OS=Homo sapiens GN=RPL21 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.211e-29
Identity = 57/100 (57.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:   70 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEF 369
            G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSF 105          
BLAST of CF510215 vs. ExPASy Swiss-Prot
Match: RL21_RAT (60S ribosomal protein L21 OS=Rattus norvegicus GN=Rpl21 PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 1.582e-29
Identity = 57/100 (57.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:   70 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEF 369
            G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F
Sbjct:    6 GKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSF 105          
The following BLAST results are available for this feature:
BLAST of CF510215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL212_ARATH8.328e-5588.6860S ribosomal protein L21-2 OS=Arabidopsis thalian... [more]
RL211_ARATH8.328e-5588.6860S ribosomal protein L21-1 OS=Arabidopsis thalian... [more]
RL21_CYAPA3.886e-3667.6260S ribosomal protein L21 OS=Cyanophora paradoxa G... [more]
RL21_DICDI8.658e-3668.6960S ribosomal protein L21 OS=Dictyostelium discoid... [more]
RL21B_SCHPO8.104e-3460.9560S ribosomal protein L21-B OS=Schizosaccharomyces... [more]
RL21A_YEAST8.104e-3460.0060S ribosomal protein L21-A OS=Saccharomyces cerev... [more]
RL21A_SCHPO8.104e-3460.9560S ribosomal protein L21-A OS=Schizosaccharomyces... [more]
RL21B_YEAST1.805e-3359.0560S ribosomal protein L21-B OS=Saccharomyces cerev... [more]
RL21_HUMAN1.211e-2957.0060S ribosomal protein L21 OS=Homo sapiens GN=RPL21... [more]
RL21_RAT1.582e-2957.0060S ribosomal protein L21 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-730 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510215 ID=CF510215; Name=CF510215; organism=Citrus sinensis; type=EST; length=374bp
ACTCACATCTCTTTCCTCTTCTCCAGAGAGAAAAAAGGAGCAGAGTACTC
AAACATGCCGGCAGGTCACGGTTTGAGGTCCCGAACAAGGGATTTGTTCG
CACGCCCCTTCAGAAAGAAGGGTTACATCCCCTTGTCCACTTACCTTAGG
ACTTACAAAATCGGCGACTACGTTGACGTCAAAGTGAACGGCGCCGTTCA
CAAAGGTATGCCCCACAAGTTCTACCATGGGCGTACAGGCCGTGTCTGGA
ATGTCACCAAGCGCGCCATCGGCGTGGAGATTAACAAGCAGGTTGGTAAC
AGGATCATCAAGAAGAGGATTCATGTTCGTGTGGAGCATGTTCAACCTTC
AAGGTGTACCGAGGAGTTCAAGCT
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