CF510223

Overview
NameCF510223
Unique NameCF510223
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig957 contig Csv1_Contig957:1..450. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: WDR12_CHLRE (Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_128420 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.705e-17
Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 2
Query:  188 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            +V V+F TKL    +VP   +A+PS+L R+GLS ++N+LL A++P     PFDFLI+GELVR SLEQ LLA  +SAE  LE+EY+ A
Sbjct:    6 QVLVKFVTKLPAHLRVPETPVAVPSDLKRYGLSQIINHLL-ALDPP---RPFDFLIDGELVRKSLEQHLLAHNLSAESTLEVEYVPA 88          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_SCHPO (Ribosome biogenesis protein ytm1 OS=Schizosaccharomyces pombe GN=ytm1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.677e-13
Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  164 DQNEENSRRVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            D     S +VQVRF T+      V    I +P++L R+GLS +VN+LL+   P     PFDFL+ G+L++ +L+++++  G+S E +L+IEYI++
Sbjct:    2 DAQSAPSGQVQVRFTTR-NEDLAVGDTPIFVPTSLKRYGLSQIVNHLLKTEKPT----PFDFLVQGQLLKTTLDEYIVQNGLSTESILDIEYIQS 91          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_PICGU (Ribosome biogenesis protein YTM1 OS=Pichia guilliermondii GN=YTM1 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 9.684e-13
Identity = 37/87 (42.53%), Postives = 59/87 (67.82%), Query Frame = 2
Query:  188 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            +V+VRF T  +   KV  N I +P +L R+GLS +VN+LL     + K+ PFDFL++G L+R SL+ +L  +G+S E V++++Y +A
Sbjct:   18 QVKVRFFTNEEDDLKVSENPIFVPVSLKRYGLSEIVNHLLNDGETK-KAIPFDFLVDGVLLRTSLQDYLTKQGLSTETVIDLQYTRA 103          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_AJECN (Ribosome biogenesis protein YTM1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=YTM1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.818e-12
Identity = 41/109 (37.61%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  137 MDMNIETPEDQNEENSRRVQVRFKTKLKPPQK---VPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            MD   + P D +   S++ Q + + KL    +   +P ++  I +P+ L R+ LS++VNNLL++  P     PF+FLING  +R S++++L A GISAE  L++EY++A
Sbjct:    1 MDGLEDGPLDASTATSQKPQRQVRLKLTSRHEDIALPESTGPILVPTGLRRYALSTLVNNLLESEKPI----PFEFLINGTYLRTSIDEYLTANGISAETTLDVEYVRA 105          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_EMENI (Ribosome biogenesis protein ytm1 OS=Emericella nidulans GN=ytm1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.806e-12
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  137 MDMNIETPEDQNEENSRRVQVRFKTKLKPPQKVPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            MD +  +   Q  +   RVQ+   T  +    +P N+  I +P+ L R+ LS++VNNLL    P     PF+FLING  +R S++++L A GISAE  LEIEY++A
Sbjct:    1 MDTSQVSVSSQAAQRQVRVQL---TSKQEDIALPDNTGPILVPTGLKRYALSTLVNNLLGNDKPI----PFEFLINGSFLRTSIDEYLTANGISAETTLEIEYVRA 99          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_ASPNC (Ribosome biogenesis protein ytm1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ytm1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.806e-12
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  131 GQMDMNIETPEDQNEENSRRVQVRFKTK-LKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            G  D        Q+ +   RVQ+  K + +  P+   +  I +P+ L R+ LS++VNNLL    P     PF+FLING  +R S++++L A GISAE  LEIEYI+A
Sbjct:    3 GVQDSTSAAASSQSAQRQVRVQLVSKQEDIALPES--TGPILVPTGLRRYALSTLVNNLLGNDKPV----PFEFLINGAFLRTSIDEYLTANGISAETTLEIEYIRA 103          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_NEOFI (Ribosome biogenesis protein ytm1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ytm1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.277e-12
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 2
Query:  185 RRVQVRFKTKLKPPQKVPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            R+V+V+  +K +    +P N+  I +P++L R+ LS++VNNLL    P     PF+FLING  +R S++++L A GISAE  LEIEY++A
Sbjct:   18 RQVRVQLTSK-QEDIALPDNAGPILVPTSLRRYALSTLVNNLLGNDKPI----PFEFLINGTFLRTSIDEYLTANGISAETTLEIEYVRA 102          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_ASPOR (Ribosome biogenesis protein ytm1 OS=Aspergillus oryzae GN=ytm1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.277e-12
Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  185 RRVQVRFKTKLKPPQKVPSNS--IAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            R+V+V+  +K +    +P N+  I +P+ L R+ LS++VNNLL    P     PF+FLING  +R S++++L A GISAE  LEIEY++A
Sbjct:   16 RQVRVQLTSK-QEDIALPENTGPILVPTGLRRYALSTLVNNLLGNDKPI----PFEFLINGSFLRTSIDEYLTANGISAETTLEIEYVRA 100          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_ASHGO (Ribosome biogenesis protein YTM1 OS=Ashbya gossypii GN=YTM1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.277e-12
Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  176 ENSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            E+  +V+V+F T+ +  +  V    + +P +L R+GLS ++N+LL    P     PFDFLI+G+L+R SL+ +L  KG+S+E VL +EY +A
Sbjct:    3 EDKSQVKVKFFTRSRTSRLHVLDAPLLLPVSLKRYGLSEIINHLLGLAEPV----PFDFLIDGQLLRCSLQDYLTRKGLSSEAVLNVEYTRA 90          
BLAST of CF510223 vs. ExPASy Swiss-Prot
Match: YTM1_COCIM (Ribosome biogenesis protein YTM1 OS=Coccidioides immitis GN=YTM1 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.071e-11
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  161 EDQNEENSRRVQVRFKTK---LKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLINGELVRMSLEQFLLAKGISAEKVLEIEYIKA 448
            E Q++    + ++RF T+   L  P+   +  I +P+ L R+ LS++VNNLL    P     P +FLING  +R S+++FL A GISAE  L++EY++A
Sbjct:    8 EVQSQTAQTQARLRFSTRDEDLALPES--TGPILVPTGLRRYALSTLVNNLLATEKPV----PLEFLINGTYLRTSVDEFLTANGISAETTLDVEYVRA 100          
The following BLAST results are available for this feature:
BLAST of CF510223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
WDR12_CHLRE1.705e-1754.02Ribosome biogenesis protein WDR12 homolog OS=Chlam... [more]
YTM1_SCHPO5.677e-1338.95Ribosome biogenesis protein ytm1 OS=Schizosaccharo... [more]
YTM1_PICGU9.684e-1342.53Ribosome biogenesis protein YTM1 OS=Pichia guillie... [more]
YTM1_AJECN2.818e-1237.61Ribosome biogenesis protein YTM1 OS=Ajellomyces ca... [more]
YTM1_EMENI4.806e-1240.57Ribosome biogenesis protein ytm1 OS=Emericella nid... [more]
YTM1_ASPNC4.806e-1240.19Ribosome biogenesis protein ytm1 OS=Aspergillus ni... [more]
YTM1_NEOFI6.277e-1244.44Ribosome biogenesis protein ytm1 OS=Neosartorya fi... [more]
YTM1_ASPOR6.277e-1244.44Ribosome biogenesis protein ytm1 OS=Aspergillus or... [more]
YTM1_ASHGO6.277e-1240.22Ribosome biogenesis protein YTM1 OS=Ashbya gossypi... [more]
YTM1_COCIM1.071e-1139.39Ribosome biogenesis protein YTM1 OS=Coccidioides i... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-738 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510223 ID=CF510223; Name=CF510223; organism=Citrus sinensis; type=EST; length=450bp
CAATCTCTTTCTTTAGTGATTGCTGCTAAAACCCTAGCTTAGCTTCCCTC
CTCTTTAACTAAAACCCTAGCTCAATCTGTGATTCCGCAAATTAACTTCA
TCCCATTAAAAAATAAAAAACCGAAAAAAAGGGCAAATGGACATGAACAT
CGAAACACCGGAAGATCAAAATGAGGAAAATTCGAGGCGCGTTCAAGTTC
GCTTCAAAACGAAGCTAAAACCTCCGCAAAAAGTTCCAAGCAACTCAATT
GCAATCCCTTCTAATCTTACTCGCTTCGGTCTATCTTCTGTCGTGAACAA
CTTGCTACAAGCAGTGAATCCTGAGTGGAAATCTGAGCCGTTTGATTTTT
TGATCAATGGGGAACTGGTTCGGATGTCGCTTGAGCAGTTTCTTCTCGCC
AAGGGCATTTCTGCGGAAAAAGTTCTGGAAATTGAGTACATAAAGGCTGT
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