CF510229
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2) HSP 1 Score: 186.422 bits (472), Expect = 3.763e-47 Identity = 94/104 (90.38%), Postives = 101/104 (97.12%), Query Frame = 2 Query: 2 PTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHI 313 PT+IPEIQRINL TTLTMKAMGIN+LLSFDF+DPP PQALISAMEQLYSLGALDEEGLLTKLG+KMAEFPL+PPLSKMLLASVDLGCSDEILT+IAMIQTG+I Sbjct: 864 PTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTMIAMIQTGNI 967
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 1.296e-39 Identity = 78/103 (75.73%), Postives = 93/103 (90.29%), Query Frame = 2 Query: 5 TTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHI 313 ++IPEIQR NL +T LTMKAMGIN+LL+FDF+DPP Q L+SAMEQLYSLGALDEEGLLT+LG+KMAEFPLDP LSKML+ASVDLGCSDEILT++AM+ ++ Sbjct: 858 SSIPEIQRTNLGNTVLTMKAMGINDLLNFDFMDPPPVQTLVSAMEQLYSLGALDEEGLLTRLGRKMAEFPLDPQLSKMLIASVDLGCSDEILTVVAMLSVQNV 960
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 2.368e-33 Identity = 66/103 (64.08%), Postives = 87/103 (84.47%), Query Frame = 2 Query: 5 TTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHI 313 T +PEIQR NL T L++KAMGIN+LLSFDF+D P + LI+AMEQLY+LGALD+EGLLT+LG++MAEFPL+P L KML+ SV LGCS+E+LTI++M+ ++ Sbjct: 939 TNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNV 1041
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 2.368e-33 Identity = 66/103 (64.08%), Postives = 87/103 (84.47%), Query Frame = 2 Query: 5 TTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHI 313 T +PEIQR NL T L++KAMGIN+LLSFDF+D P + LI+AMEQLY+LGALD+EGLLT+LG++MAEFPL+P L KML+ SV LGCS+E+LTI++M+ ++ Sbjct: 915 TNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNV 1017
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 5.275e-33 Identity = 65/104 (62.50%), Postives = 88/104 (84.62%), Query Frame = 2 Query: 2 PTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHI 313 P+ IPEIQR NL HT L +KAMGIN+LL+FDF+DPP Q +I+A++ LY+L ALD+EGLLT LG+KMA+FP++P LSK+L+ SV+LGCS+E+L+IIAM+ +I Sbjct: 860 PSPIPEIQRQNLSHTILMLKAMGINDLLNFDFMDPPPAQTMIAALQNLYALSALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELGCSEEMLSIIAMLSVPNI 963
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.299e-31 Identity = 63/104 (60.58%), Postives = 84/104 (80.77%), Query Frame = 2 Query: 2 PTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHI 313 PT +PEIQR NL T L +KAMGINNL+ FDF+D P ++I+A+ L++L ALD +GLLTKLG++MAEFPL+P LSK+L+ SVDLGCS+E+LTI+AM+ +I Sbjct: 889 PTPVPEIQRTNLASTLLQLKAMGINNLIDFDFMDAPPLDSMITALNTLHTLSALDGDGLLTKLGRRMAEFPLEPSLSKLLIMSVDLGCSEEVLTIVAMLNVQNI 992
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 2.894e-31 Identity = 64/101 (63.37%), Postives = 83/101 (82.18%), Query Frame = 2 Query: 8 TIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGH 310 TIPEIQR NL + L +K+MGIN+L++FDF+DPP Q LI+A+EQLY+LGAL++ G LTKLG+KMAEFP+DP LSKM++AS CS+EILTI AM+ G+ Sbjct: 818 TIPEIQRTNLGNVVLLLKSMGINDLMNFDFMDPPPAQTLIAALEQLYALGALNDRGQLTKLGRKMAEFPVDPQLSKMIIASEKYKCSEEILTICAMLSVGN 918
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.756e-28 Identity = 59/102 (57.84%), Postives = 80/102 (78.43%), Query Frame = 2 Query: 8 TIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHI 313 T+PEIQR NL HT L +KAMGIN+LL FDF+DPP +++A+ +LY L +LD+EG LT LGK+M+ FP+DP LS+ LL+SVD CSDEI+TII+M+ ++ Sbjct: 834 TVPEIQRQNLSHTILMLKAMGINDLLKFDFMDPPPKNLMLNALTELYHLQSLDDEGKLTNLGKEMSLFPMDPTLSRSLLSSVDNQCSDEIVTIISMLSVQNV 935
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 1.258e-26 Identity = 52/98 (53.06%), Postives = 77/98 (78.57%), Query Frame = 2 Query: 5 TTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMI 298 +T+PEIQR NL + L +K++G+++LL F F+D P ++++M QL++LGALD G LT +G+KM EFPLDP LSKML+ S ++GCSDE+LTI++M+ Sbjct: 791 STVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQDNMLNSMYQLWTLGALDNTGQLTPMGRKMVEFPLDPTLSKMLIMSAEMGCSDEVLTIVSML 888
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.258e-26 Identity = 56/99 (56.57%), Postives = 77/99 (77.78%), Query Frame = 2 Query: 2 PTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMI 298 P T PEI R NL +T LT+K +GI++L+ FDF+DPP+P+ L+ A+E L LGALD+EG LTK G+ M+EFPLDP +SKML+ S + CS+EIL++ AM+ Sbjct: 427 PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAML 525 The following BLAST results are available for this feature:
BLAST of CF510229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >CF510229 ID=CF510229; Name=CF510229; organism=Citrus sinensis; type=EST; length=313bpback to top |