CF510229

Overview
NameCF510229
Unique NameCF510229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length313
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7025 contig Csv1_Contig7025:435..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 3.763e-47
Identity = 94/104 (90.38%), Postives = 101/104 (97.12%), Query Frame = 2
Query:    2 PTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHI 313
            PT+IPEIQRINL  TTLTMKAMGIN+LLSFDF+DPP PQALISAMEQLYSLGALDEEGLLTKLG+KMAEFPL+PPLSKMLLASVDLGCSDEILT+IAMIQTG+I
Sbjct:  864 PTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTMIAMIQTGNI 967          
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.296e-39
Identity = 78/103 (75.73%), Postives = 93/103 (90.29%), Query Frame = 2
Query:    5 TTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHI 313
            ++IPEIQR NL +T LTMKAMGIN+LL+FDF+DPP  Q L+SAMEQLYSLGALDEEGLLT+LG+KMAEFPLDP LSKML+ASVDLGCSDEILT++AM+   ++
Sbjct:  858 SSIPEIQRTNLGNTVLTMKAMGINDLLNFDFMDPPPVQTLVSAMEQLYSLGALDEEGLLTRLGRKMAEFPLDPQLSKMLIASVDLGCSDEILTVVAMLSVQNV 960          
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.368e-33
Identity = 66/103 (64.08%), Postives = 87/103 (84.47%), Query Frame = 2
Query:    5 TTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHI 313
            T +PEIQR NL  T L++KAMGIN+LLSFDF+D P  + LI+AMEQLY+LGALD+EGLLT+LG++MAEFPL+P L KML+ SV LGCS+E+LTI++M+   ++
Sbjct:  939 TNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNV 1041          
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.368e-33
Identity = 66/103 (64.08%), Postives = 87/103 (84.47%), Query Frame = 2
Query:    5 TTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHI 313
            T +PEIQR NL  T L++KAMGIN+LLSFDF+D P  + LI+AMEQLY+LGALD+EGLLT+LG++MAEFPL+P L KML+ SV LGCS+E+LTI++M+   ++
Sbjct:  915 TNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNV 1017          
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.275e-33
Identity = 65/104 (62.50%), Postives = 88/104 (84.62%), Query Frame = 2
Query:    2 PTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHI 313
            P+ IPEIQR NL HT L +KAMGIN+LL+FDF+DPP  Q +I+A++ LY+L ALD+EGLLT LG+KMA+FP++P LSK+L+ SV+LGCS+E+L+IIAM+   +I
Sbjct:  860 PSPIPEIQRQNLSHTILMLKAMGINDLLNFDFMDPPPAQTMIAALQNLYALSALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELGCSEEMLSIIAMLSVPNI 963          
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.299e-31
Identity = 63/104 (60.58%), Postives = 84/104 (80.77%), Query Frame = 2
Query:    2 PTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHI 313
            PT +PEIQR NL  T L +KAMGINNL+ FDF+D P   ++I+A+  L++L ALD +GLLTKLG++MAEFPL+P LSK+L+ SVDLGCS+E+LTI+AM+   +I
Sbjct:  889 PTPVPEIQRTNLASTLLQLKAMGINNLIDFDFMDAPPLDSMITALNTLHTLSALDGDGLLTKLGRRMAEFPLEPSLSKLLIMSVDLGCSEEVLTIVAMLNVQNI 992          
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.894e-31
Identity = 64/101 (63.37%), Postives = 83/101 (82.18%), Query Frame = 2
Query:    8 TIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGH 310
            TIPEIQR NL +  L +K+MGIN+L++FDF+DPP  Q LI+A+EQLY+LGAL++ G LTKLG+KMAEFP+DP LSKM++AS    CS+EILTI AM+  G+
Sbjct:  818 TIPEIQRTNLGNVVLLLKSMGINDLMNFDFMDPPPAQTLIAALEQLYALGALNDRGQLTKLGRKMAEFPVDPQLSKMIIASEKYKCSEEILTICAMLSVGN 918          
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.756e-28
Identity = 59/102 (57.84%), Postives = 80/102 (78.43%), Query Frame = 2
Query:    8 TIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHI 313
            T+PEIQR NL HT L +KAMGIN+LL FDF+DPP    +++A+ +LY L +LD+EG LT LGK+M+ FP+DP LS+ LL+SVD  CSDEI+TII+M+   ++
Sbjct:  834 TVPEIQRQNLSHTILMLKAMGINDLLKFDFMDPPPKNLMLNALTELYHLQSLDDEGKLTNLGKEMSLFPMDPTLSRSLLSSVDNQCSDEIVTIISMLSVQNV 935          
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.258e-26
Identity = 52/98 (53.06%), Postives = 77/98 (78.57%), Query Frame = 2
Query:    5 TTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMI 298
            +T+PEIQR NL +  L +K++G+++LL F F+D P    ++++M QL++LGALD  G LT +G+KM EFPLDP LSKML+ S ++GCSDE+LTI++M+
Sbjct:  791 STVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQDNMLNSMYQLWTLGALDNTGQLTPMGRKMVEFPLDPTLSKMLIMSAEMGCSDEVLTIVSML 888          
BLAST of CF510229 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.258e-26
Identity = 56/99 (56.57%), Postives = 77/99 (77.78%), Query Frame = 2
Query:    2 PTTIPEIQRINLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMI 298
            P T PEI R NL +T LT+K +GI++L+ FDF+DPP+P+ L+ A+E L  LGALD+EG LTK G+ M+EFPLDP +SKML+ S +  CS+EIL++ AM+
Sbjct:  427 PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAML 525          
The following BLAST results are available for this feature:
BLAST of CF510229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
DHX8_ARATH3.763e-4790.38Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX8_DICDI1.296e-3975.73ATP-dependent RNA helicase dhx8 OS=Dictyostelium d... [more]
DHX8_MOUSE2.368e-3364.08ATP-dependent RNA helicase DHX8 OS=Mus musculus GN... [more]
DHX8_HUMAN2.368e-3364.08ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN... [more]
PRP22_SCHPO5.275e-3362.50Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
MOG5_CAEEL1.299e-3160.58Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_DICDI2.894e-3163.37Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP22_YEAST1.756e-2857.84Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
MOG1_CAEEL1.258e-2653.06Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_ARATH1.258e-2656.57Probable pre-mRNA-splicing factor ATP-dependent RN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-744 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510229 ID=CF510229; Name=CF510229; organism=Citrus sinensis; type=EST; length=313bp
CCCTACTACAATTCCAGAAATCCAAAGGATTAATCTTGTACATACTACCC
TCACTATGAAGGCTATGGGAATCAATAATCTGCTGTCTTTTGATTTTGTG
GATCCTCCATCTCCCCAAGCTCTTATTTCTGCCATGGAGCAATTATACAG
TCTTGGAGCTCTGGATGAGGAGGGACTTCTGACTAAATTAGGTAAGAAAA
TGGCAGAATTTCCCCTAGATCCGCCATTATCAAAGATGCTGCTAGCAAGT
GTAGACCTTGGTTGCAGTGATGAGATATTAACGATCATCGCCATGATTCA
AACTGGCCATATC
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