CF510230

Overview
NameCF510230
Unique NameCF510230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length231
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510230 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.413e-35
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 3
Query:   24 NRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWE 230
            NRRWIAVKKFTK AWP+PKQFA+EAWGVGKLRH RLANLIGYCCDGDERLLVAE+MPNDTLAKHLFHWE
Sbjct:   97 NRRWIAVKKFTKMAWPEPKQFAEEAWGVGKLRHNRLANLIGYCCDGDERLLVAEFMPNDTLAKHLFHWE 165          
BLAST of CF510230 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.628e-21
Identity = 43/70 (61.43%), Postives = 59/70 (84.29%), Query Frame = 3
Query:   21 DNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWE 230
            +N+R IAVK+F + +WPD +QF +EA  VG+LR+ R+ANL+G C + +ERLL+AE+MPN+TLAKHLFHWE
Sbjct:   79 ENQRRIAVKRFNRKSWPDSRQFLEEAKAVGQLRNHRMANLLGCCYEDEERLLIAEFMPNETLAKHLFHWE 148          
BLAST of CF510230 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.186e-21
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 3
Query:    3 RLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLF 221
            RLQ+G     ++A+K+F   AW DPK F +EA  VGKLRHKRL NLIGYCCDGD+R LVA++M NDTLAK LF
Sbjct:   68 RLQNGG----FVAIKRFNNMAWSDPKLFLEEAQRVGKLRHKRLVNLIGYCCDGDKRFLVADFMANDTLAKRLF 136          
The following BLAST results are available for this feature:
BLAST of CF510230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y4523_ARATH4.413e-3592.75Probable serine/threonine-protein kinase At4g35230... [more]
Y5126_ARATH1.628e-2161.43Probable serine/threonine-protein kinase At5g41260... [more]
SSP_ARATH6.186e-2164.38Probable inactive receptor-like kinase SSP OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-745 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510230 ID=CF510230; Name=CF510230; organism=Citrus sinensis; type=EST; length=231bp
GCCGCCTTCAAGACGGAAATGATAACCGCCGTTGGATCGCCGTTAAAAAA
TTCACCAAACATGCCTGGCCCGATCCCAAACAGTTTGCTGATGAGGCTTG
GGGTGTTGGGAAGCTGAGGCATAAGAGGCTGGCGAATTTGATTGGCTATT
GTTGTGATGGTGATGAGAGATTGCTGGTGGCTGAGTACATGCCAAATGAT
ACTCTTGCTAAACATTTATTTCACTGGGAGA
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