CF510234

Overview
NameCF510234
Unique NameCF510234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF510234_ssr13 microsatellite CF510234_ssr13:13..27. BLAST: Citrus ESTs to Prunus persica proteins V1
CF510234_ssr96 microsatellite CF510234_ssr96:96..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CF510234 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.913e-24
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:  139 QQTCPINALKLGACXXXXXXXXXXXXXXXAKEKCCPLLYGLVDLDAAICLCTAIKIKALSLIDILVPISLQVLVSDCGKHPPAGFQCP 402
            Q TCPI+ALKLGAC               AK+ CCPLL GLVDLDAAICLCT I++K L+ I+I++PI+LQVL+ DCGK+PP  F+CP
Sbjct:  258 QPTCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLN-INIILPIALQVLIDDCGKYPPKDFKCP 344
[Close]
BLAST of CF510234 vs. ExPASy Swiss-Prot
Match: CCDP_MAIZE (Cortical cell-delineating protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 42/93 (45.16%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:  124 PLLRTQQTCPINALKLGACXXXXXXXXXXXXXXXAKEKCCPLLYGLVDLDAAICLCTAIKIKALSLIDILVPISLQVLVSDCGKHPPAGFQCP 402
            P   +   CPI+ALKL  C                 E+CCPLL GLVDLDAA+CLCTAIK   L  I + VP+SL  ++++CG+  P  F CP
Sbjct:   40 PSSHSHGRCPIDALKLKVCAKVLGLVKVGLPQY---EQCCPLLEGLVDLDAALCLCTAIKANVLG-IHLNVPLSLNFILNNCGRICPEDFTCP 128
[Close]
BLAST of CF510234 vs. ExPASy Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.011e-13
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:  148 CPINALKLGACXXXXXXXXXXXXXXXAKEKCCPLLYGLVDLDAAICLCTAIKIKALSLIDILVPISLQVLVSDCGKHPPAGFQC 399
            CP +ALKLG C                   CC LL GLV+L+AA+CLCTAIK   L   ++ +PI+L +++++CGK  P GF+C
Sbjct:   54 CPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGK-NLNLPIALSLVLNNCGKQVPNGFEC 136
The following BLAST results are available for this feature:
BLAST of CF510234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PRF1_SOLLC5.913e-2459.0936.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
CCDP_MAIZE1.907e-1445.16Cortical cell-delineating protein OS=Zea mays PE=2... [more]
14KD_DAUCA8.011e-1342.8614 kDa proline-rich protein DC2.15 OS=Daucus carot... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-749 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-9_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510234 ID=CF510234; Name=CF510234; organism=Citrus sinensis; type=EST; length=413bp
CCAAAGGTGAAACCTCCTCCTCCTCCTCCAGTTGTAAAATCACCGCCGCC
ACCACCGCCAAAGGTGAAACCTCCTCCTCCCTCTCCAGTTGTAAAACCAC
CACCACCACCAAATGTGGGATACCCACTGCTACGAACACAACAAACTTGT
CCAATTAATGCTCTCAAGCTTGGTGCATGCGTCGATGTTCTCGGTGGTTT
AATTCACATTGGTCTTGGCGACGGTGCTAAGGAGAAATGCTGCCCATTGC
TTTATGGACTAGTTGACTTGGATGCTGCAATATGTCTTTGCACTGCCATT
AAAATTAAGGCTCTGAGTCTCATCGATATTCTCGTACCCATCTCTTTGCA
AGTACTTGTCAGCGACTGTGGCAAACATCCGCCAGCCGGATTTCAGTGTC
CTATCAATTAGTT
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