CF510252

Overview
NameCF510252
Unique NameCF510252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:405..917. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 3.679e-82
Identity = 153/173 (88.44%), Postives = 160/173 (92.49%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGLLTGRPNSKATGP GE++DA EA K AG   GFFELQPKEGLALVNGTAVGSGLASMVLFE N LA+LSE+LSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGS+Y+  AKKLHE DPLQKPKQDRYALRTSPQWLGPQIEVIRF+TKSIEREIN
Sbjct:  206 VPLSYIAGLLTGRPNSKATGPTGEVLDAAEAFKAAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSELLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREIN 378          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PAL2_PHAVU (Phenylalanine ammonia-lyase class 2 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 8.195e-82
Identity = 152/173 (87.86%), Postives = 163/173 (94.22%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFG--FFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGLLTGRPNSKA GP+GEI++A+EA + A  G  FFELQPKEGLALVNGTAVGSGLAS+VLFEAN LA+LSE++SAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY+  AKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRF+TKSIEREIN
Sbjct:  203 VPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFELANIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREIN 375          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PALY_STYHU (Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 1.826e-81
Identity = 152/173 (87.86%), Postives = 161/173 (93.06%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFG--FFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGLLTGRPNSKA GPNGE ++A+EA + AG G  FFELQPKEGLALVNGT VGSGLAS+VLFEAN LA+LSE+LSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  AKKLHEIDPLQKPKQDRYALRTSPQWLGP +EVIRF+TKSIEREIN
Sbjct:  206 VPLSYIAGLLTGRPNSKAVGPNGETLNAKEAFQAAGIGSDFFELQPKEGLALVNGTPVGSGLASVVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLVEVIRFSTKSIEREIN 378          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PAL2_PEA (Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 2.384e-81
Identity = 152/173 (87.86%), Postives = 163/173 (94.22%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGLLTGRPNSKA GP+GEI++A+EA + AG   GFFELQPKEGLALVNGTAVGSGLAS+VLFEAN LA+LSE+LSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGS+YV  AKKLHE+DPLQKPKQDRYALRTSPQWLGP IEVIRF+TKSIEREIN
Sbjct:  215 VPLSYIAGLLTGRPNSKAHGPSGEILNAREAFQSAGINDGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREIN 387          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PALY_MEDSA (Phenylalanine ammonia-lyase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 9.061e-81
Identity = 151/173 (87.28%), Postives = 161/173 (93.06%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFG--FFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGLLTGRPNSKA GP+GE+++A+EA   AG    FFELQPKEGLALVNGTAVGSGLAS+VLFEAN LA+LSE+LSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  AKKLHEIDPLQKPKQDRYALRTSPQWLGP +EVIRF+TKSIEREIN
Sbjct:  216 VPLSYIAGLLTGRPNSKAHGPSGEVLNAKEAFNLAGINAEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLVEVIRFSTKSIEREIN 388          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PAL1_SOYBN (Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PAL1 PE=3 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 1.183e-80
Identity = 151/173 (87.28%), Postives = 161/173 (93.06%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFG--FFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGLLTGRPNSKA GP+GE+++A+EA + A     FFELQPKEGLALVNGTAVGSGLASMVLFEAN LA+LSE+LSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY+  AKKLHEIDPLQKPKQDRYALRTSPQWLGP IEVIRF+TKSIEREIN
Sbjct:  204 VPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFELASINSEFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREIN 376          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PAL1_ARATH (Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3)

HSP 1 Score: 298.13 bits (762), Expect = 1.546e-80
Identity = 148/173 (85.55%), Postives = 162/173 (93.64%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGLLTGRPNSKATGPNGE + A+EA K AG   GFF+LQPKEGLALVNGTAVGSG+ASMVLFE N L++L+EILSA+FAEVM GKPEFTDHLTH+LKHHPGQIEAAAIMEHILDGSSY+ +A+KLHE+DPLQKPKQDRYALRTSPQWLGPQIEVIR+ATKSIEREIN
Sbjct:  216 VPLSYIAGLLTGRPNSKATGPNGEALTAEEAFKLAGISSGFFDLQPKEGLALVNGTAVGSGMASMVLFETNVLSVLAEILSAVFAEVMSGKPEFTDHLTHRLKHHPGQIEAAAIMEHILDGSSYMKLAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRYATKSIEREIN 388          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PAL2_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=PALA PE=2 SV=2)

HSP 1 Score: 295.819 bits (756), Expect = 7.670e-80
Identity = 150/173 (86.71%), Postives = 158/173 (91.33%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGLLTGRPNSKA GPNGE ++A+EA + AG   GFFELQPKEGLALVNGTAVGSGLASMVLF+AN LA+ SE+LSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  A+KLHE DPLQKPKQDRYALRTSPQWLGPQIEVIR ATK IEREIN
Sbjct:  203 VPLSYIAGLLTGRPNSKAVGPNGETLNAEEAFRVAGVNGGFFELQPKEGLALVNGTAVGSGLASMVLFDANVLAVFSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHETDPLQKPKQDRYALRTSPQWLGPQIEVIRSATKMIEREIN 375          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PAL1_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.002e-79
Identity = 148/173 (85.55%), Postives = 160/173 (92.49%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGLLTGRPNSKA GPNGE ++A+EA + AG   GFFELQPKEGLALVNGTAVGSG+ASMVLF++N LA++SE+LSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  A+KLHE+DPLQKPKQDRYALRTSPQWLGPQIEVIR ATK IEREIN
Sbjct:  206 VPLSYIAGLLTGRPNSKAVGPNGETLNAEEAFRVAGVNGGFFELQPKEGLALVNGTAVGSGMASMVLFDSNILAVMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREIN 378          
BLAST of CF510252 vs. ExPASy Swiss-Prot
Match: PALY_HELAN (Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 1.709e-79
Identity = 149/173 (86.13%), Postives = 159/173 (91.91%), Query Frame = 1
Query:    1 VPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREIN 513
            VPLSYIAGLLTGRPNSKA GP GE+++A+ A  QAG   GFFELQPKEGLALVNGTAVGSG+ASMVLFEAN LALLSE+LSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIME+ILDGS YV  A+K+HE+DPLQKPKQDRYALRTSPQWLGPQIEVIR ATK IEREIN
Sbjct:  202 VPLSYIAGLLTGRPNSKAVGPAGEVLNAESAFAQAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANVLALLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEYILDGSDYVKAAQKVHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSATKMIEREIN 374          
The following BLAST results are available for this feature:
BLAST of CF510252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
PALY_POPTR3.679e-8288.44Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PAL2_PHAVU8.195e-8287.86Phenylalanine ammonia-lyase class 2 OS=Phaseolus v... [more]
PALY_STYHU1.826e-8187.86Phenylalanine ammonia-lyase OS=Stylosanthes humili... [more]
PAL2_PEA2.384e-8187.86Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=... [more]
PALY_MEDSA9.061e-8187.28Phenylalanine ammonia-lyase OS=Medicago sativa PE=... [more]
PAL1_SOYBN1.183e-8087.28Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PA... [more]
PAL1_ARATH1.546e-8085.55Phenylalanine ammonia-lyase 1 OS=Arabidopsis thali... [more]
PAL2_TOBAC7.670e-8086.71Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PAL1_TOBAC1.002e-7985.55Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PALY_HELAN1.709e-7986.13Phenylalanine ammonia-lyase OS=Helianthus annuus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_123000-869 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-67_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510252 ID=CF510252; Name=CF510252; organism=Citrus sinensis; type=EST; length=513bp
GTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGCCCAATTCTAA
GGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAAGCCTCTAAAC
AAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTT
GTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGGTTCTGTTTGA
GGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTG
AAGTCATGCAAGGCAAACCTGAGTTCACCGATCACTTGACACACAAATTG
AAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGGAACATATCCT
CGATGGCAGCTCTTATGTTAACGTGGCTAAGAAGTTGCATGAGATTGATC
CTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGAACTTCACCACAA
TGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAACCAAGTCTATTGA
ACGGGAGATCAAC
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