CF831928
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_MANES (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 3.419e-13 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 213 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 252 HSP 2 Score: 44.2838 bits (103), Expect = 3.419e-13 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 245 KKPATPWGYPALGRRSRKRNKYSDNLIL 272
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_VITVI (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 3.420e-13 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 3.420e-13 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 3.420e-13 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 3.420e-13 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPATPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 3.420e-13 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 3.420e-13 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPATPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_GOSHI (50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 3.420e-13 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 3.420e-13 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPATPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 3.420e-13 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 3.420e-13 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPATPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_CARPA (50S ribosomal protein L2, chloroplastic OS=Carica papaya GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 3.420e-13 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 3.420e-13 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPATPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 3.420e-13 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 3.420e-13 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPATPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 3.420e-13 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 211 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 250 HSP 2 Score: 44.2838 bits (103), Expect = 3.420e-13 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 243 KKPATPWGYPALGRRSRKRNKYSDNLIL 270
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 3.420e-13 Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RK+ +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKRPATPWG 249 HSP 2 Score: 45.4394 bits (106), Expect = 3.420e-13 Identity = 21/28 (75.00%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 KRP WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KRPATPWGYPALGRRSRKRNKYSDNLIL 269 The following BLAST results are available for this feature:
BLAST of CF831928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF831928 ID=CF831928; Name=CF831928; organism=Citrus sinensis; type=EST; length=852bpback to top |