CF831946

Overview
NameCF831946
Unique NameCF831946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:148..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831946 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.248e-22
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = -3
Query:  285 MSDTCGNCDCADRSQSVKKGSSYAADFVETDLSFVSPVVVMDVQAAETEGNCKCGPTCACVNCTCG 482
            MSDTCGNCDCAD++Q VKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CF831946 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.253e-18
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = -3
Query:  282 TCGNCDCADRSQSVKKGSSYAADFVETDLSFVSPVVVMDVQAAETEGNCKCGPTCACVNCTCGS 473
            TCGNCDC D+SQ VKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CF831946 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.208e-17
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = -3
Query:  288 MSDTCGNCDCADRSQSVKKGSSYAADFVETDLSFVSPVVVMDVQAAETEGNCKCGPTCACVNCTC 482
            MSD CGNCDCAD SQ VKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CF831946 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = -3
Query:  288 MSDTCGNCDCADRSQSVKKGSSYAADFVETDLSFVSPVVVMDVQAAETEGNCKCGPTCACVNCTC 482
            MS  C NCDC+D SQ  KKG S+    VET+   +   V+MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMD-TVIMDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CF831946 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.251e-14
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = -3
Query:  285 MSDTCGNCDCADRSQSVKKGSSYAADFVETDLSFVSPVVVMDVQAAETEGNCKCGPTCACVNCTCG 482
            MSD CGNCDCAD+SQ VKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CF831946 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.251e-14
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = -3
Query:  285 MSDTCGNCDCADRSQSVKKGSSYAADFVETDLSFVSPVVVMDVQAAETEGNCKCGPTCACVNCTCG 482
            MSD CGNCDCAD+SQ VKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CF831946 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.633e-14
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = -3
Query:  285 MSDTCGNCDCADRSQSVKKGSSYAADFVETDLSFVSPVVVMDVQAAETEGNCKCGPTCACVNCTCG 482
            MS  C NCDCAD +Q VKKG+SY    VET+   +  V V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CF831946 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.170e-12
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = -3
Query:  285 MSDTCGNCDCADRSQSVKKGSSYAADFVETDLSFVSPVVVMDVQAAETEGNCKCGPTCACVNCTCG 482
            MSD CGNCDCAD+SQ VKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CF831946 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.448e-12
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = -3
Query:  285 MSDTCGNCDCADRSQSVKKGSSYAADFVETDLSFVSPVVVMDVQAAETEGNCKCGPTCACVNCTCG 482
            MSD CG+CDCAD+SQ VKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CF831946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA1.248e-2268.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC9.253e-1859.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE1.208e-1766.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV7.331e-1555.38Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ1.251e-1453.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.251e-1453.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3_MALDO1.633e-1456.06Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3B_ORYSJ1.170e-1248.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI4.448e-1246.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01A23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831946 ID=CF831946; Name=CF831946; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTAGACTACAATAATACATTAAAATTAAACCACACCTTTTCACGG
TCATGGCCATGGCCATATATTACATGATTACCAAGAAGGAAACACAAAAC
ATTACGAGTGATGGGTGACACAACACGCACATCACTCCACACACTAGTAG
TAGACCATCATAAAAACGAAGTAGAGAATTTTTCTTTTTTTTTAATCACC
CTTACATTATTCTTAACCCCCACAATATTTAGGCACACTTGCAGCTTCTT
ATTTTTTGCTGCATGCGTTTGCTTATTAGAGACTACCACAAGTGCAGTTC
ACACAAGCGCAGGTGGGGCCGCACTTGCAGTTACCTTCAGTCTCAGCAGC
CTGAACGTCCATGACAACAACGGGGCTGACAAAGCTCAAGTCAGTCTCGA
CGAAGTCAGCAGCATAGCTGCTTCCCTTCTTCACACTCTGGCTCCTGTCA
GCGCAGTCGCAGTTGCCGCAGGTGTCCGACATGTTGATTGAGCTTAGAAC
TTGGAACTTAAAACTGGAAATAGAGGGCTCTTTATTGTACG
back to top