CF831953

Overview
NameCF831953
Unique NameCF831953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10376 contig Csv1_Contig10376:48..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF831953 vs. ExPASy Swiss-Prot
Match: RK29_ARATH (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.958e-39
Identity = 86/134 (64.18%), Postives = 100/134 (74.63%), Query Frame = 1 
Query:   82 STFNGIQIRQSWPIRTPLRFATXXXXXXXXXTVVMMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFXXXXXXXXXXLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ 483
            S+F+G++I+     R P   A          +VVMM+KRE E+KEIR+KTTE++ EEVVDLKGELFMLRLQKS RNEFKSS+F          LTVKRERE++EGI KRLSRKLDRQWKKSIV RPPPSLKKLQ
Sbjct:   27 SSFHGVRIQHQVSARVPA--AATISSSSPKPSVVMMSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQ 158
[Close]
BLAST of CF831953 vs. ExPASy Swiss-Prot
Match: RK29_MAIZE (50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.183e-32
Identity = 69/99 (69.70%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:  178 VVMMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFXXXXXXXXXXLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLK 474
            +V MAKRE+E++EIRA TTE++ EEVVDLKGELF+LRL++S R EFK+SEF          LTVKRERE+E+GINKRLSRKLDR+WK+SIVVRPPPSL+
Sbjct:   58 MVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRKRIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLR 156
The following BLAST results are available for this feature:
BLAST of CF831953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK29_ARATH4.958e-3964.1850S ribosomal protein L29, chloroplastic OS=Arabid... [more]
RK29_MAIZE1.183e-3269.7050S ribosomal protein L29, chloroplastic OS=Zea ma... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01B03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831953 ID=CF831953; Name=CF831953; organism=Citrus sinensis; type=EST; length=761bp
CAAAAGATGACCCTGTGTCTCTCAATTGCTTCGACAACAACAATCACTTT
CCCAACAGAGCCCTTCTCGAAAATTCCAAAGTCAACCTTTAACGGCATCC
AAATTCGTCAGTCGTGGCCTATTCGCACGCCGTTGCGTTTCGCGACTTCG
TCGTCGGGAAGCCGTGGTTCGTCGACAGTGGTTATGATGGCAAAGAGAGA
AGAAGAAATGAAGGAAATTAGAGCCAAAACGACAGAGGAGATTAACGAAG
AGGTCGTTGATTTGAAGGGTGAGCTGTTTATGCTACGTCTTCAAAAATCA
GTTCGCAATGAGTTCAAGTCTAGTGAATTTCGTCGTATGCGCAGAAGGAT
TGCTCGCATGCTTACTGTTAAACGTGAAAGAGAGCTTGAGGAAGGAATTA
ACAAGAGATTGTCCAGAAAGCTTGATCGACAATGGAAGAAAAGCATTGTA
GTTAGACCACCTCCATCCTTGAAGAAGTTGCAAGAGGAAGAGGCGGCTGC
AGAAGCTGAGAAGTCTGCATGAGCCATCTATATACACTTTGCAAATAATT
TGTTTTCATTTTTTTAAGTGAAAGCTCCTGAAATCATTGCAGATTTGCTG
GCTCAAACAATTTGTGTGTAATGTTCTGTATTGTAGGTATGTTCCTATTT
CTGTATAATATTTTTAACTTTTCCTCCCATGAAACAAACTTGAGGAAGTG
TTTGTTCTATTCAAATTGAATTTCTGTAACTATTACCTCTTCTGATTTTA
AAAAAAAAAAA
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