CF831956

Overview
NameCF831956
Unique NameCF831956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:1..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG2_ARATH (ATP synthase gamma chain 2, chloroplastic OS=Arabidopsis thaliana GN=ATPC2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.905e-41
Identity = 85/114 (74.56%), Postives = 99/114 (86.84%), Query Frame = -1
Query:  229 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQ 570
            DE+FRLT+ +GK+ VER  +   K E+SPLM FEQDP QILDAMMPLY+NSQILRALQES ASE+A+RM+AMS ATDNA ELKKNL++AYN+ RQAKITGELLEIVAGAEAL +
Sbjct:  272 DEMFRLTSKDGKLAVERTKLEVEKPEISPLMQFEQDPVQILDAMMPLYLNSQILRALQESLASELASRMNAMSNATDNAVELKKNLTMAYNRARQAKITGELLEIVAGAEALRE 385          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_MAIZE (ATP synthase subunit gamma, chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.624e-40
Identity = 83/112 (74.11%), Postives = 98/112 (87.50%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DELFRLTT EGK+ VER+ V       SP++ FEQDP QILDA++PLY+NSQILRALQES ASE+AARMSAMS+ATDNA EL+KNLS+AYN++RQAKITGE+LEIVAGA+AL
Sbjct:  246 DELFRLTTKEGKLTVEREKVKIETQPFSPVVQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNAIELRKNLSIAYNRQRQAKITGEILEIVAGADAL 357          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_TOBAC (ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 9.971e-40
Identity = 82/112 (73.21%), Postives = 96/112 (85.71%), Query Frame = -1
Query:  235 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 570
            DE FRLTT EGK+ VERD +     + SP++ FEQDP QILDA++PLY+NSQILRALQES ASE+AARMSAMS+ATDNA ELKKNLS  YN++RQAKITGE+LEIVAGA+AL
Sbjct:  265 DEFFRLTTKEGKLTVERDIIRTKTTDFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNATELKKNLSRVYNRQRQAKITGEILEIVAGADAL 376          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_SPIOL (ATP synthase gamma chain, chloroplastic OS=Spinacia oleracea GN=ATPC PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 8.441e-39
Identity = 81/111 (72.97%), Postives = 94/111 (84.68%), Query Frame = -1
Query:  238 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 570
            DELFRLTT EGK+ VERD +       SP++ FEQDPAQILDA++PLY+NSQILRALQES ASE+AARM+AMS ATDNA+ELKK LS+ YN+ RQAKITGE+LEIVAGA A
Sbjct:  252 DELFRLTTKEGKLTVERDMIKTETPAFSPILEFEQDPAQILDALLPLYLNSQILRALQESLASELAARMTAMSNATDNANELKKTLSINYNRARQAKITGEILEIVAGANA 362          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG1_ARATH (ATP synthase gamma chain 1, chloroplastic OS=Arabidopsis thaliana GN=ATPC1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.592e-37
Identity = 77/111 (69.37%), Postives = 95/111 (85.59%), Query Frame = -1
Query:  238 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 570
            DE FRLTT EGK+ VER++      + SP++ FEQDP QILDA++PLY+NSQILRALQES ASE+AARMSAMS+A+DNA +LKK+LS+ YN++RQAKITGE+LEIVAGA A
Sbjct:  261 DEFFRLTTKEGKLTVERETFRTPTADFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSASDNASDLKKSLSMVYNRKRQAKITGEILEIVAGANA 371          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_PEA (ATP synthase gamma chain, chloroplastic OS=Pisum sativum GN=ATPC PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.647e-34
Identity = 74/108 (68.52%), Postives = 88/108 (81.48%), Query Frame = -1
Query:  247 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG 570
            DELFRLTT EGK+ VERD +     + SP++ FEQDP QILDA++PLY+NSQILR LQES ASE+AARMSAMS+A DNA ELK +L+  YN+  QAKITGE+LEIVAG
Sbjct:  262 DELFRLTTKEGKLTVERDVIRSKTVDFSPILQFEQDPVQILDALLPLYLNSQILRPLQESLASELAARMSAMSSAFDNASELKTDLTRVYNRATQAKITGEILEIVAG 369          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_ANAVT (ATP synthase gamma chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=atpG PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.630e-32
Identity = 72/113 (63.72%), Postives = 91/113 (80.53%), Query Frame = -1
Query:  232 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT 570
            DE+FRLTT  G+  VER +VT     L   M+FEQDP QILD+++PLY+++Q+LRALQES ASE+AARM+AMS A+DNA EL K+LS++YN+ RQA IT ELLE+V GAEALT
Sbjct:  203 DEIFRLTTRGGQFEVERQTVTTQARPLPRDMIFEQDPVQILDSLLPLYLSNQLLRALQESAASELAARMTAMSNASDNAGELIKSLSLSYNKARQAAITQELLEVVGGAEALT 315          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_NOSP7 (ATP synthase gamma chain OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=atpG PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.859e-32
Identity = 70/113 (61.95%), Postives = 90/113 (79.65%), Query Frame = -1
Query:  232 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT 570
            DE+FRLTT  GK  VER+ V      L+P M+FEQDP QILD+++PLY+++Q+LRALQES ASE+AARM+AMS A++NA EL   L+++YN+ RQA IT ELLE+V GAEALT
Sbjct:  203 DEIFRLTTRGGKFEVEREKVASQVRPLAPDMIFEQDPVQILDSLLPLYLSNQLLRALQESAASELAARMTAMSNASENAGELINTLTLSYNKARQAAITQELLEVVGGAEALT 315          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_CHLRE (ATP synthase gamma chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPC PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.653e-32
Identity = 68/111 (61.26%), Postives = 88/111 (79.28%), Query Frame = -1
Query:  238 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 570
            DE+F+LTT  G+  VER+  T     L P ++FEQ+PAQILDA++PLYM+S +LR+LQE+ ASE+AARM+AM+ A+DNA ELKK L+V YN++RQAKIT EL EIV GA A
Sbjct:  245 DEIFKLTTKGGEFAVEREKTTIETEALDPSLIFEQEPAQILDALLPLYMSSCLLRSLQEALASELAARMNAMNNASDNAKELKKGLTVQYNKQRQAKITQELAEIVGGAAA 355          
BLAST of CF831956 vs. ExPASy Swiss-Prot
Match: ATPG_ANASP (ATP synthase gamma chain OS=Anabaena sp. (strain PCC 7120) GN=atpG PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.653e-32
Identity = 71/113 (62.83%), Postives = 91/113 (80.53%), Query Frame = -1
Query:  232 DELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALT 570
            DE+FRLTT  G+  VER +VT     L   M+FEQDP QILD+++PLY+++Q+LRALQES ASE+AARM+AMS A++NA EL K+LS++YN+ RQA IT ELLE+V GAEALT
Sbjct:  203 DEIFRLTTRGGQFQVERQTVTSQARPLPRDMIFEQDPVQILDSLLPLYLSNQLLRALQESAASELAARMTAMSNASENAGELIKSLSLSYNKARQAAITQELLEVVGGAEALT 315          
The following BLAST results are available for this feature:
BLAST of CF831956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG2_ARATH6.905e-4174.56ATP synthase gamma chain 2, chloroplastic OS=Arabi... [more]
ATPG_MAIZE2.624e-4074.11ATP synthase subunit gamma, chloroplastic OS=Zea m... [more]
ATPG_TOBAC9.971e-4073.21ATP synthase gamma chain, chloroplastic OS=Nicotia... [more]
ATPG_SPIOL8.441e-3972.97ATP synthase gamma chain, chloroplastic OS=Spinaci... [more]
ATPG1_ARATH1.592e-3769.37ATP synthase gamma chain 1, chloroplastic OS=Arabi... [more]
ATPG_PEA1.647e-3468.52ATP synthase gamma chain, chloroplastic OS=Pisum s... [more]
ATPG_ANAVT2.630e-3263.72ATP synthase gamma chain OS=Anabaena variabilis (s... [more]
ATPG_NOSP75.859e-3261.95ATP synthase gamma chain OS=Nostoc punctiforme (st... [more]
ATPG_CHLRE7.653e-3261.26ATP synthase gamma chain, chloroplastic OS=Chlamyd... [more]
ATPG_ANASP7.653e-3262.83ATP synthase gamma chain OS=Anabaena sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831956 ID=CF831956; Name=CF831956; organism=Citrus sinensis; type=EST; length=570bp
TTTTTTTTTTTTTTTTTGCCAGAAAAAAAATGTTATTTCTTTTCGTTCGT
TATTCTAGTTTACCATATGAAATACTCAAGTCATCAATCCAAATTATAAA
CCAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCAAT
ATTCTCAACCCCCCCAAACAAAAAAAAGGGATATAGAAAAATCAAGTCAA
GGAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCA
GCAACAATCTCCAATAGTTCACCAGTGATTTTAGCCTGGCGTTCTTGGTT
ATAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAGCAG
TACTCATGGCACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGC
AATGCCCTCAAAATCTGACTATTCATATAGAGTGGCATCATCGCATCAAG
AATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTT
TATTGAATGTCACGCTATCTCTCTCGACAATCATCTTCCCTTCATTAGTT
GTCAACCTAAACAACTCATC
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