CF831959

Overview
NameCF831959
Unique NameCF831959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF831959_ssr49 microsatellite CF831959_ssr49:49..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12290 contig Csv1_Contig12290:487..1132. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.494e-60
Identity = 105/127 (82.68%), Postives = 115/127 (90.55%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            DNGGWCNPP QHFD+AEPAFLQIAQ RAGIVP+SFRR+PC KKGGIRFT+NGHSYFNLVLI+NVGGAGDVH+VSIKGSKT  WQAMSRNWGQNWQSNSY+  QSL FQ+T SDGRT+ SN+V P NW
Sbjct:  116 DNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNW 242          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.225e-58
Identity = 103/126 (81.75%), Postives = 112/126 (88.89%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D+GGWCNPP  HFDMAEPAFL IAQ RAGIVP+SFRR+PC KKGG+RFTVNGHSYFNLVL+TNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L GQSL FQ+TASDGRTVTSNNV    W
Sbjct:  110 DDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.225e-58
Identity = 103/126 (81.75%), Postives = 112/126 (88.89%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D+GGWCNPP  HFDMAEPAFL IAQ RAGIVP+SFRR+PC KKGG+RFTVNGHSYFNLVL+TNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L GQSL FQ+TASDGRTVTSNNV    W
Sbjct:  110 DDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.728e-58
Identity = 102/126 (80.95%), Postives = 109/126 (86.51%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D+GGWCNPP  HFDMAEPAFLQI   RAGIVP+S+RR+PC KKGGIRFT+NGHSYFNLVL+TNV G GDV SVSIKGS TGWQ MSRNWGQNWQSNSYL GQSL FQ+  SDGRTVTSNNVVP  W
Sbjct:  115 DDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGW 240          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.267e-55
Identity = 94/126 (74.60%), Postives = 110/126 (87.30%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            +NGGWCNPP +HFD+A+P F +IAQ RAGIVP+S+RR+PC ++GGIRFT+NGHSYFNLVLITNVGGAGDVHS +IKGS+T WQAMSRNWGQNWQSNSYL GQ+L F++T SDGRTV S N  P  W
Sbjct:  112 NNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGW 237          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.687e-55
Identity = 92/124 (74.19%), Postives = 109/124 (87.90%), Query Frame = -1
Query:  269 GGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 640
            GGWCNPP QHFD+++P F +IAQ RAGIVP+++RR+PC ++GGIRFT+NGHSYFNLVLITNVGGAGDVHS  +KGS+TGWQAMSRNWGQNWQSNSYL GQSL F++T SDG+T+ SNNV    W
Sbjct:  115 GGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGW 238          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.401e-54
Identity = 97/127 (76.38%), Postives = 113/127 (88.98%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            DNGGWCNPP +HFD+AEPAFLQIAQ RAGIVP++FRR+PC K GGIRFT+NG+ YF+LVLITNVGGAGD+ +VS+KGSKT  WQ+MSRNWGQNWQSN+YL GQSL FQ+T SDGRTV S +VVP +W
Sbjct:  118 DNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDW 244          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.121e-54
Identity = 88/124 (70.97%), Postives = 110/124 (88.71%), Query Frame = -1
Query:  269 GGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 640
            GGWCNPP  HFD+++P F +IAQ +AG+VP+S+RR+PC ++GGIRFT+NGHSYFNLVL+TNVGGAGDVHSV++KGS+T WQ MSRNWGQNWQSN+ L GQ+L F++TASDGRTV SNN+ P +W
Sbjct:  118 GGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASW 241          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.004e-52
Identity = 89/126 (70.63%), Postives = 108/126 (85.71%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            DNGGWCNPP +HFD+A P FL+IAQ RAGIVP+S+RR+PC K+GGIRFT+NGH YFNLVLITNV GAGD+   S+KGS+TGW ++SRNWGQNWQSN+ L+GQ+L F++T SD RT TS N+VP NW
Sbjct:  119 DNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNW 244          
BLAST of CF831959 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.713e-52
Identity = 90/126 (71.43%), Postives = 108/126 (85.71%), Query Frame = -1
Query:  269 DNGGWCNPPFQHFDMAEPAFLQIAQSRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLIGQSLFFQLTASDGRTVTSNNVVPGNW 646
            D GGWCNPP  HFDMAEPAF +IAQ+RAG+VP+ +RR+ CAK+GGIRFT+ GHSYFNLVL+TNVGGAGDV +VS+KGS++GWQAMS NWG NWQ+ + L GQ L F++TASDGRTVTS+NV P  W
Sbjct:  112 DAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGW 237          
The following BLAST results are available for this feature:
BLAST of CF831959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXPA8_ARATH6.494e-6082.68Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA4_ORYSJ1.225e-5881.75Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI1.225e-5881.75Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA2_ORYSJ2.728e-5880.95Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP10_ARATH1.267e-5574.60Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA1_ARATH3.687e-5574.19Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXPA2_ARATH1.401e-5476.38Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXP15_ARATH3.121e-5470.97Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA4_ARATH1.004e-5270.63Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP11_ORYSJ1.713e-5271.43Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831959 ID=CF831959; Name=CF831959; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTTTGAACGCATTTATACCCGAATCATTCAATTGAAGTAATAACTA
TATATATAACACAATCATTTCTATTTATAGAGGCCTAACGGGTGCCAACA
GACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACC
TACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTA
AATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTC
AAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCA
CAGTCCTGCCGTCACTGGCTGTCAATTGGAAAAAAAGACTTTGGCCGATA
AGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTG
CCATCCAGTCTTTGAACCCTTGATTGATACTGAATGGACATCTCCTGCTC
CTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACG
GTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAAT
TGGGACGATACCGGCGCGGGATTGGGCAATTTGCAAGAAAGCGGGCTCAG
CCATGTCAAAGTGCTGGAAGGGAGGATTGCACCAACCGCCGTTGTC
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