CF831977

Overview
NameCF831977
Unique NameCF831977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:185..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 1.832e-53
Identity = 94/102 (92.16%), Postives = 97/102 (95.10%), Query Frame = -1
Query:  164 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 469
            PVAATVNCADNTGAK LYIISVKGI GRL RLPSACVGDMVMATVKKGKPDLRKKV+P+VIVRQ KPW RKDGVFMYFEDNAGVIVNPKGEM+GSAITGPIG
Sbjct:   21 PVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIG 122          

HSP 2 Score: 39.6614 bits (91), Expect = 1.832e-53
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = -2
Query:  109 LDKECGDLWPRIASAANAIV 168
            + KEC DLWPRIASAANAIV
Sbjct:  121 IGKECADLWPRIASAANAIV 140          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.172e-52
Identity = 92/102 (90.20%), Postives = 96/102 (94.12%), Query Frame = -1
Query:  164 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 469
            PVAAT+NCADNTGAK LYIISVKGI GRL RLPSACVGDMVMATVKKGKPDLRKKVMP+V+VRQ KPW RKDGVFMYFEDNAGVIVN KGEM+GSAITGPIG
Sbjct:   21 PVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIG 122          

HSP 2 Score: 39.6614 bits (91), Expect = 1.172e-52
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = -2
Query:  109 LDKECGDLWPRIASAANAIV 168
            + KEC DLWPRIASAANAIV
Sbjct:  121 IGKECADLWPRIASAANAIV 140          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.044e-47
Identity = 86/102 (84.31%), Postives = 90/102 (88.24%), Query Frame = -1
Query:  164 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPIG 469
            PV A VNCADNTGAK LY+IS  G+ GRL RLP+A VGDMVMATVKKGKPDLRKKVMP+VIVRQ KPW RKDGVFMYFEDNAGVIVNPKGEM  SAITGPIG
Sbjct:   21 PVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGPIG 121          

HSP 2 Score: 39.6614 bits (91), Expect = 1.044e-47
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = -2
Query:  109 LDKECGDLWPRIASAANAIV 168
            + KEC DLWPRIASAANAIV
Sbjct:  120 IGKECADLWPRIASAANAIV 139          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.455e-43
Identity = 81/101 (80.20%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +NCADNTGAK LYIISVKGI GRL RLPSA VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+
Sbjct:   21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121          

HSP 2 Score: 31.9574 bits (71), Expect = 2.455e-43
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2
Query:  112 KECGDLWPRIASAANAI 162
            KEC DLWPRIAS A +I
Sbjct:  123 KECADLWPRIASNAGSI 139          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.434e-43
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +NCADNTGAK LYIISVKGI GRL RLP+A VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+
Sbjct:   21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121          

HSP 2 Score: 31.9574 bits (71), Expect = 5.434e-43
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2
Query:  112 KECGDLWPRIASAANAI 162
            KEC DLWPRIAS A +I
Sbjct:  123 KECADLWPRIASNAGSI 139          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.434e-43
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +NCADNTGAK LYIISVKGI GRL RLP+A VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+
Sbjct:   21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121          

HSP 2 Score: 31.9574 bits (71), Expect = 5.434e-43
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2
Query:  112 KECGDLWPRIASAANAI 162
            KEC DLWPRIAS A +I
Sbjct:  123 KECADLWPRIASNAGSI 139          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.434e-43
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +NCADNTGAK LYIISVKGI GRL RLP+A VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+
Sbjct:   21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121          

HSP 2 Score: 31.9574 bits (71), Expect = 5.434e-43
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2
Query:  112 KECGDLWPRIASAANAI 162
            KEC DLWPRIAS A +I
Sbjct:  123 KECADLWPRIASNAGSI 139          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 5.434e-43
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +NCADNTGAK LYIISVKGI GRL RLP+A VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+
Sbjct:   21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121          

HSP 2 Score: 31.9574 bits (71), Expect = 5.434e-43
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2
Query:  112 KECGDLWPRIASAANAI 162
            KEC DLWPRIAS A +I
Sbjct:  123 KECADLWPRIASNAGSI 139          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.434e-43
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +NCADNTGAK LYIISVKGI GRL RLP+A VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+
Sbjct:   21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121          

HSP 2 Score: 31.9574 bits (71), Expect = 5.434e-43
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2
Query:  112 KECGDLWPRIASAANAI 162
            KEC DLWPRIAS A +I
Sbjct:  123 KECADLWPRIASNAGSI 139          
BLAST of CF831977 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 5.434e-43
Identity = 80/101 (79.21%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  167 PVAATVNCADNTGAKTLYIISVKGITGRLIRLPSACVGDMVMATVKKGKPDLRKKVMPSVIVRQCKPWCRKDGVFMYFEDNAGVIVNPKGEMQGSAITGPI 469
            PV A +NCADNTGAK LYIISVKGI GRL RLP+A VGDMVMATVKKGKP+LRKKV P+V++RQ K + RKDGVF+YFEDNAGVIVN KGEM+GSAITGP+
Sbjct:   21 PVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121          

HSP 2 Score: 31.9574 bits (71), Expect = 5.434e-43
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = -2
Query:  112 KECGDLWPRIASAANAI 162
            KEC DLWPRIAS A +I
Sbjct:  123 KECADLWPRIASNAGSI 139          
The following BLAST results are available for this feature:
BLAST of CF831977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RL23_ARATH1.832e-5392.1660S ribosomal protein L23 OS=Arabidopsis thaliana ... [more]
RL23_TOBAC1.172e-5290.2060S ribosomal protein L23 OS=Nicotiana tabacum GN=... [more]
RL23_TORRU1.044e-4784.3160S ribosomal protein L23 OS=Tortula ruralis GN=RP... [more]
RL23_DANRE2.455e-4380.2060S ribosomal protein L23 OS=Danio rerio GN=rpl23 ... [more]
RL23_RAT5.434e-4379.2160S ribosomal protein L23 OS=Rattus norvegicus GN=... [more]
RL23_PIG5.434e-4379.2160S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P... [more]
RL23_MOUSE5.434e-4379.2160S ribosomal protein L23 OS=Mus musculus GN=Rpl23... [more]
RL23_ICTPU5.434e-4379.2160S ribosomal protein L23 OS=Ictalurus punctatus G... [more]
RL23_HUMAN5.434e-4379.2160S ribosomal protein L23 OS=Homo sapiens GN=RPL23... [more]
RL23_BOVIN5.434e-4379.2160S ribosomal protein L23 OS=Bos taurus GN=RPL23 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01B20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831977 ID=CF831977; Name=CF831977; organism=Citrus sinensis; type=EST; length=469bp
ACAGAAAGTTCACATAAAAGCTTTACTCCTTCCTACTATGAAACTTCACC
AGAATTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGCCTTGA
ATGTCTTAAACGATAGCATTGGCTGCACTTGCAATCCTCGGCCACAAATC
GCCACACTCTTTATCCAATTGGACCGGTGATGGCAGAACCCTGCATTTCT
CCCTTTGGATTCACAATAACACCTGCATTATCTTCAAAGTACATGAAGAC
ACCATCCTTTCTGCACCATGGCTTGCACTGCCTTACAATGACGGAGGGCA
TCACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACAGTAGCCATAACC
ATGTCTCCAACACAGGCAGACGGCAAACGGATGAGGCGACCTGTGATTCC
CTTAACTGAGATGATGTAAAGGGTCTTTGCCCCAGTGTTGTCAGCACAGT
TCACAGTTGCTGCCACTGG
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