CF831992

Overview
NameCF831992
Unique NameCF831992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF831992_ssr112 microsatellite CF831992_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6180 contig Csv1_Contig6180:17..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.082e-71
Identity = 128/139 (92.09%), Postives = 137/139 (98.56%), Query Frame = 3 
Query:  276 EAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            EAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSVKELIYKRGYGKLN QRIALTDNSI++QALG+HGIIC+EDLIHEI+TVGPHFKEANNFLWPF+
Sbjct:   68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQ 206
[Close]
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.082e-71
Identity = 129/139 (92.81%), Postives = 136/139 (97.84%), Query Frame = 3 
Query:  276 EAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            EAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYG+PNLKSVKELIYKRGYGKLN QRIALTDNSI+EQALG+HGIIC EDLIHEILTVGPHFKEANNFLWPF+
Sbjct:   68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQ 206
[Close]
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.744e-69
Identity = 125/139 (89.93%), Postives = 135/139 (97.12%), Query Frame = 3 
Query:  276 EAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            EAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSVKELIYKRG+GKLN QR ALTDNSI++Q LG+HGIIC+EDLIHEI+TVGPHFKEANNFLWPF+
Sbjct:   70 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQ 208
[Close]
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 1.044e-57
Identity = 102/138 (73.91%), Postives = 118/138 (85.51%), Query Frame = 3 
Query:  279 AKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS+I ++LG+ GIICMEDLIHEI TVG  FKEANNFLWPFK
Sbjct:   97 ARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFK 234

HSP 2 Score: 29.6462 bits (65), Expect = 1.044e-57
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2 
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKRRGQA*G 292
            RKLIY + K Y KEY +  +  IR+ R  +  G
Sbjct:   69 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAG 101
[Close]
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.045e-57
Identity = 101/138 (73.19%), Postives = 119/138 (86.23%), Query Frame = 3 
Query:  279 AKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPFK
Sbjct:   75 ARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFK 212

HSP 2 Score: 29.6462 bits (65), Expect = 1.045e-57
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2 
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKRRGQA*G 292
            RKLIY + K Y KEY +  +  IR+ R  +  G
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAG 79
[Close]
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.045e-57
Identity = 101/138 (73.19%), Postives = 119/138 (86.23%), Query Frame = 3 
Query:  279 AKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPFK
Sbjct:   75 ARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFK 212

HSP 2 Score: 29.6462 bits (65), Expect = 1.045e-57
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2 
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKRRGQA*G 292
            RKLIY + K Y KEY +  +  IR+ R  +  G
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAG 79
[Close]
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.045e-57
Identity = 101/138 (73.19%), Postives = 119/138 (86.23%), Query Frame = 3 
Query:  279 AKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPFK
Sbjct:   74 ARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFK 211

HSP 2 Score: 29.6462 bits (65), Expect = 1.045e-57
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2 
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKRRGQA*G 292
            RKLIY + K Y KEY +  +  IR+ R  +  G
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAG 78
[Close]
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.045e-57
Identity = 101/138 (73.19%), Postives = 119/138 (86.23%), Query Frame = 3 
Query:  279 AKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  FKEANNFLWPFK
Sbjct:   74 ARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWPFK 211

HSP 2 Score: 29.6462 bits (65), Expect = 1.045e-57
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2 
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKRRGQA*G 292
            RKLIY + K Y KEY +  +  IR+ R  +  G
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAG 78
[Close]
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 1.775e-57
Identity = 101/138 (73.19%), Postives = 118/138 (85.51%), Query Frame = 3 
Query:  279 AKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS++ ++LG+ GIICMEDLIHEI TVG  FKEANNFLWPFK
Sbjct:   87 ARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFK 224

HSP 2 Score: 29.6462 bits (65), Expect = 1.775e-57
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 2 
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKRRGQA*G 292
            RKLIY + K Y KEY +  +  IR+ R  +  G
Sbjct:   59 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAG 91
[Close]
BLAST of CF831992 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 1.137e-56
Identity = 101/138 (73.19%), Postives = 120/138 (86.96%), Query Frame = 3 
Query:  279 AKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFK 692
            AK  G F++  EAKL+F+IRI+GIN + PK +KILQLLRL QI NGVF++V KAT  M+  VEP+V YGYPNLKSVKELIYKRGYGK+NKQR+ALTDNSIIE+ LG++GIICMEDLIHEI TVGP+FK+A+NFLWPFK
Sbjct:   74 AKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWPFK 211

HSP 2 Score: 30.0314 bits (66), Expect = 1.137e-56
Identity = 13/33 (39.39%), Postives = 21/33 (63.64%), Query Frame = 2 
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKRRGQA*G 292
            R +I+ R + Y KEY + ++E IRL+R  +  G
Sbjct:   46 RAVIFKRAETYVKEYRDVEREKIRLQRAAKQDG 78
The following BLAST results are available for this feature:
BLAST of CF831992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL73_ARATH7.082e-7192.0960S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL72_ARATH7.082e-7192.8160S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL74_ARATH1.744e-6989.9360S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL7_MOUSE1.044e-5773.9160S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_HUMAN1.045e-5773.1960S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_BOVIN1.045e-5773.1960S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_PONAB1.045e-5773.1960S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MACFA1.045e-5773.1960S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_RAT1.775e-5773.1960S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_NEUCR1.137e-5673.1960S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831992 ID=CF831992; Name=CF831992; organism=Citrus sinensis; type=EST; length=693bp
CGCGAAGCCAGACCTCTCTCCGTGAAAAGATAGATATAAAAGACCTCTAA
GAACAAATTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTACCA
GAGTCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAA
GAAGCAGGAGCTGGAAGCCGCGAAAAAGAAGAAGGCTGAGACCCGGAAGC
TCATTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAA
AAAGAACTCATTCGTTTGAAGCGTAGAGGCCAAGCTTAAGGGTGGATTTT
ATGTCAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGTATC
AATGCTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAG
ACAGATTTTTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATA
TGCTGCACAGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAG
AGTGTCAAAGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCA
GAGGATTGCTTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAGC
ATGGAATTATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGT
CCTCACTTCAAGGAGGCAAACAACTTCCTATGGCCCTTCAAGC
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