CF831998

Overview
NameCF831998
Unique NameCF831998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11031 contig Csv1_Contig11031:39..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.787e-31
Identity = 66/105 (62.86%), Postives = 86/105 (81.90%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            IM IL+K+AV   +  R +P I+ G IVQ+++ +PENKRR+S  KGIVI+R+NAGI TT R+RR++AGVGVE +FPLYSPNI EIKV+  +KVR+A+LYYLRDKL
Sbjct:  122 IMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKL 226          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.210e-31
Identity = 62/105 (59.05%), Postives = 88/105 (83.81%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            +M IL+++A+E  +  R +P+I+ G IV++K+ +PENKRR+S  KGIV++R+NAGI TT R+RR++AG+GVE +FP+YSPNI EIKV+  +KVRRA+LYYLRDKL
Sbjct:  114 VMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKL 218          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.110e-31
Identity = 62/105 (59.05%), Postives = 88/105 (83.81%), Query Frame = 1
Query:  382 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            IM +L+K+A+E  ++ R +P ++ G IV++K+ +PENKRR+S  KGIV++R+NAGI TT R+RR++AG+GVE +FP+YSPNI EIKV+  +KVRRA+LYYLRDKL
Sbjct:  118 IMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKL 222          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_MAGSA (50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.932e-20
Identity = 48/106 (45.28%), Postives = 75/106 (70.75%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I++ L+KE +E + + R +P   PG  +++ V VI  N+ RV   +G+ IAR+N G++++F +R++  G GVE +FPLYSPNI  I+V+ +  VRRAKLYYLRD+
Sbjct:    3 NIIEQLEKEQIEKLTADRGVPSFAPGDTLKVNVKVIEGNRERVQAYEGVCIARKNDGLNSSFVVRKISYGEGVERIFPLYSPNIASIEVVRRGDVRRAKLYYLRDR 108          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_RHORT (50S ribosomal protein L19 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.175e-19
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +I++  +KE +E +  QR +P   PG  +++ V VI  N++RV   +G+ IARRNA ++++F +R++  G GVE +FPLY+P I  I+V+ + KVRRAKLYYLR +
Sbjct:    2 NIIEQFEKEQIEKLLEQRGVPQFSPGDTLRVHVKVIEGNRQRVQVYEGVCIARRNAALNSSFTVRKISFGEGVERIFPLYAPTIDRIEVVRRGKVRRAKLYYLRGR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_ACICJ (50S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) GN=rplS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.453e-19
Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +++Q +D E +  +   R +PD KPG  +++ V + E +R R+   +G+ IAR N GI++ F +R++  G GVE +FPLYSPN+ EI V  +  VRRAKLYYLR +
Sbjct:    2 NVIQTIDAEQIGKLAEARAVPDFKPGDNLRVSVRVTEGERTRIQAFEGVCIARSNRGINSNFTVRKISYGEGVERVFPLYSPNVTEIAVTRRGVVRRAKLYYLRGR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_THENN (50S ribosomal protein L19 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.586e-18
Identity = 52/114 (45.61%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKLNPLRNK 714
            H+++I++K+       ++EIPD +PG  V++ V VI  ++ R    +GIVIA+R +GI+ TF +RR+ + GVGVE +FP +SP + +I+V+ K KVRRAKLYYLRD    +R K
Sbjct:    5 HLVRIIEKKY-----EKKEIPDFRPGDTVRVHVKVIEGDRERTQVFEGIVIAKRGSGINRTFTVRRIGSHGVGVERIFPFHSPVVEKIEVVRKGKVRRAKLYYLRDVKGKIRIK 113          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_CALS8 (50S ribosomal protein L19 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.586e-18
Identity = 46/97 (47.42%), Postives = 69/97 (71.13%), Query Frame = 1
Query:  409 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 696
            +E+   +++IPD KPG  V++   VI   + R+   +G+VI RR  G+S TF +RR+  GVGVE +FPL+SP I +I+V+ + KVRRAKLYY+R+K+
Sbjct:    7 IESEMLRKDIPDFKPGDTVRVHFKVIEGGRERIQAFEGLVIKRRGKGLSETFTVRRISYGVGVERVFPLHSPRIEKIEVIRRGKVRRAKLYYIREKI 103          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_NOVAD (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.072e-18
Identity = 48/106 (45.28%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +++Q L+ EA+   K+++EIPD + G  V++ V + E +R RV   +G+ IAR N G+ + F +R++  G GVE +FPLYSPNI  I V+ +  VRRAKLYYLR +
Sbjct:    2 NLIQQLEAEAIAEFKAKKEIPDFRAGDTVRVGVRVVEGERTRVQAYEGVCIARSNRGLGSNFTVRKISFGEGVERVFPLYSPNIDSITVVRRGVVRRAKLYYLRGR 107          
BLAST of CF831998 vs. ExPASy Swiss-Prot
Match: RL19_SPHWW (50S ribosomal protein L19 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.706e-18
Identity = 46/106 (43.40%), Postives = 71/106 (66.98%), Query Frame = 1
Query:  379 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 693
            +++Q L+ E +   K  + IPD +PG  +++ V + E +R RV   +G+ IAR N G+ ++F +R++  G GVE +FPLYSPN+  I+V+ K  VRRAKLYYLR +
Sbjct:    2 NLIQQLEAEQIAKFKESKSIPDFRPGDTLRVGVKVVEGERTRVQAYEGVCIARANKGMGSSFTVRKISFGEGVERVFPLYSPNVESIEVVRKGVVRRAKLYYLRGR 107          
The following BLAST results are available for this feature:
BLAST of CF831998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK19_SPIOL2.787e-3162.8650S ribosomal protein L19, chloroplastic OS=Spinac... [more]
RK191_ARATH6.210e-3159.0550S ribosomal protein L19-1, chloroplastic OS=Arab... [more]
RK192_ARATH8.110e-3159.0550S ribosomal protein L19-2, chloroplastic OS=Arab... [more]
RL19_MAGSA4.932e-2045.2850S ribosomal protein L19 OS=Magnetospirillum magn... [more]
RL19_RHORT4.175e-1944.3450S ribosomal protein L19 OS=Rhodospirillum rubrum... [more]
RL19_ACICJ5.453e-1943.4050S ribosomal protein L19 OS=Acidiphilium cryptum ... [more]
RL19_THENN1.586e-1845.6150S ribosomal protein L19 OS=Thermotoga neapolitan... [more]
RL19_CALS81.586e-1847.4250S ribosomal protein L19 OS=Caldicellulosiruptor ... [more]
RL19_NOVAD2.072e-1845.2850S ribosomal protein L19 OS=Novosphingobium aroma... [more]
RL19_SPHWW2.706e-1843.4050S ribosomal protein L19 OS=Sphingomonas wittichi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831998 ID=CF831998; Name=CF831998; organism=Citrus sinensis; type=EST; length=741bp
GGGAGCATCCGATTAATTCAAAGGCATGCCCTTACCAGCTCAAACACTTG
TTCAATCCCAAACGGAGTCGTTTCAACCAAATCTGTCGGTCATTCGTTCC
ATTCTTTCAACAATTTTCTATCCCGCTCGCTCCACTTGTTAGCTACTCGC
TCGCAGGTAAAATATGGCTATCAAACCGAGTCTTGGGGTTCTTCGAACTA
TTACATTAGAACTAGTGGGCCTGGTTTGTTTCCACCAGCAATGATGGAGC
CACATTTTGCCAACAGGTGTATTTCAACATCGGAAAGTTCAGTTGAATCA
GCTTCATATCCTCCTGCTGCTGCTTCCTCTGATTTGGCTCCCCGCATCAA
ATTTAAGAGGCTTGATAAAACTGCCAGGCATATAATGCAGATTCTAGATA
AGGAAGCAGTGGAGAATGTGAAGTCACAGAGGGAGATCCCCGATATAAAG
CCTGGTTATATCGTGCAACTAAAAGTGGTAATTCCAGAGAACAAGAGACG
TGTTTCAACTTTAAAGGGTATTGTTATAGCAAGGCGTAATGCTGGTATAA
GTACTACATTTAGATTGAGGAGGCTGGTAGCAGGGGTTGGAGTCGAATCT
CTTTTCCCTTTGTACTCACCTAATATACTAGAAATAAAGGTGCTGGACAA
GAAGAAAGTGAGGAGGGCCAAGCTTTACTATCTGAGGGATAAGCTGAATC
CACTTAGAAATAAATAAGAAGCTTTATTGGTGGGAGGATTC
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