CF832000

Overview
NameCF832000
Unique NameCF832000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832000 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.438e-29
Identity = 69/169 (40.83%), Postives = 97/169 (57.40%), Query Frame = 2
Query:   14 FLFGVFGNATALFLFLAPTITFMRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFASKNNILGSTINGTGSAIEIIYVLIFLLFA--PKKEKAKIFGLFMLVLTGFXXXXXXXXXXFHGNAGK-IFCGFAATIFSIIMYASPLSIMRMVIRTKSVEFMPFFLSLFVFL 511
            F+ GV GN  +  LF AP  TF RI ++KS E+FS +PYV T++NC+L  +YGLP   K++IL STING G  IE+ YV ++L++    K  +  I G   L +               G+  K  F G    +F+I MY +P   +  V++TKSVE+MPF LSL  F+
Sbjct:    9 FIIGVIGNVISFGLFAAPAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFV 177          
The following BLAST results are available for this feature:
BLAST of CF832000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RPG1_ARATH8.438e-2940.83Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01C10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832000 ID=CF832000; Name=CF832000; organism=Citrus sinensis; type=EST; length=525bp
GGATAATGCACATTTCTTGTTCGGTGTTTTTGGAAATGCTACTGCTTTAT
TTCTCTTCTTGGCTCCTACAATCACATTTATGAGGATTGTAAGAAGGAAA
TCCACAGAGCAATTCTCTGGAATTCCTTATGTGATGACCTTGCTTAATTG
TCTCCTCTCTGCCTGGTATGGTCTCCCTTTTGCGTCGAAGAACAACATTT
TGGGATCCACAATCAATGGAACTGGTTCAGCAATTGAGATCATATATGTT
TTGATCTTCCTACTCTTTGCGCCAAAGAAGGAGAAAGCGAAAATCTTTGG
GCTTTTCATGCTTGTTCTCACGGGCTTCGCTGCTGTTGCCTTGGTGTCTC
TCTTAGCCTTTCATGGCAACGCTGGAAAGATTTTCTGTGGCTTTGCTGCT
ACCATTTTCTCTATTATCATGTATGCCTCACCTCTTTCTATCATGAGAAT
GGTGATTAGAACAAAGAGTGTTGAGTTCATGCCATTTTTCTTGTCACTAT
TTGTCTTCCTGTGTGGCACCTCTTG
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