CF832002

Overview
NameCF832002
Unique NameCF832002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7368 contig Csv1_Contig7368:180..947. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832002 vs. ExPASy Swiss-Prot
Match: FLA17_ARATH (Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 9.656e-91
Identity = 170/255 (66.67%), Postives = 190/255 (74.51%), Query Frame = 2
Query:    2 SHYTXXXXXXXXXXXXQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNLKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSTKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKXXXXXXXXXXXXXXIYDXXXXXXXXXXXXXXXXXXXHRHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVL 766
            S YT            QTLE+AVGRHNITIFAP+NEALER+LDPEFKRFLLEPGNLKSLQTLLMFHI+P+R+GS  WP E+SG  KH+TL ND V LS+   K+++  AEI RPDD+TRPDG+IHGIERLL+PRSVQEDFNRRR+L+SISAVLP+GAPEVDPRT+RLKK              I                       HF+GE QVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVL
Sbjct:   54 SRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHIIPNRVGSNQWPSEESGRVKHHTLGNDQVRLSNGQGKKMVDLAEIIRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRSLQSISAVLPEGAPEVDPRTNRLKKPAAPVPAGSPPALPIQSAMAPGPSLAPAPAPGPGGKQHHFDGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVL 308          
BLAST of CF832002 vs. ExPASy Swiss-Prot
Match: FLA18_ARATH (Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana GN=FLA18 PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 6.477e-87
Identity = 172/261 (65.90%), Postives = 191/261 (73.18%), Query Frame = 2
Query:    2 SHYTXXXXXXXXXXXXQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNLKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFV-HLSS-KST--KRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKK--XXXXXXXXXXXXXXIYDXXXXXXXXXXXXXXXXXXXHRHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVL 766
            S YT            QTLE+AVGRHNITIFAP+NEALER+LDP+FKRFLL+PGNLKSLQTLL+ HI+P R+GS  WP+E SG  KH TL +D V HLS  K T  KRL+ SA I RPDD+TRPDG+IHGIERLL+PRSVQEDFNRRRNLRSISAVLP+GAPE+DPRT+RLKK                I                     H+HFNG+ QVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVL
Sbjct:   51 SRYTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHIIPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNGKRLVNSAVITRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRNLRSISAVLPEGAPEIDPRTNRLKKSATAVSVPAGSPPVLPIESAMAPGPSLAPAPAPGPGGAHKHFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVL 311          
BLAST of CF832002 vs. ExPASy Swiss-Prot
Match: FLA16_ARATH (Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana GN=FLA16 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.721e-85
Identity = 166/255 (65.10%), Postives = 180/255 (70.59%), Query Frame = 2
Query:    2 SHYTXXXXXXXXXXXXQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNLKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSTKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKXXXXXXXXXXXXXXIYDXXXXXXXXXXXXXXXXXXXHRHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVL 766
            SHYT            QTLEEAVG+HNITIFAP+N+ALER LDP FK FLLEP NLKSLQ+LLMFHILP RI S  WP   S S  H TL ND +HL+       + SAEI RPDD+ RPDG+IHGIERLL+PRSVQEDFNRRR+LRSISAV+P+GAPEVDPRTHRLKK              IYD                     HFNG+ QVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVL
Sbjct:   46 SHYTELAELVEKALLLQTLEEAVGKHNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSLLMFHILPKRITSPQWP---SLSHHHRTLSNDHLHLTVDVNTLKVDSAEIIRPDDVIRPDGIIHGIERLLIPRSVQEDFNRRRSLRSISAVIPEGAPEVDPRTHRLKKPSPAVPAGAPPVLPIYDAMSPGPSLAPAPAPGPGGPRGHFNGDAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVL 297          
BLAST of CF832002 vs. ExPASy Swiss-Prot
Match: FLA15_ARATH (Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 5.674e-83
Identity = 163/255 (63.92%), Postives = 179/255 (70.20%), Query Frame = 2
Query:    2 SHYTXXXXXXXXXXXXQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNLKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSTKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKXXXXXXXXXXXXXXIYDXXXXXXXXXXXXXXXXXXXHRHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVL 766
            SHYT            QTLEEAVG+HNITIFAP+N+ALE+ LDPEFK FLL+P NLKSLQ+LLMFHILP RI S   P   S    H TL ND +H     T   + SAEI +PDD+TRPDG+IHGIERLL+PRSVQEDFNRRR+LRSI+AVLP+GAPEVDPRTHRLKK              +YD                     HFNGE QVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVL
Sbjct:   42 SHYTELAELVEKALLLQTLEEAVGQHNITIFAPRNDALEKNLDPEFKSFLLQPKNLKSLQSLLMFHILPKRITS---PQFSSAVVSHRTLSNDHLHF----TNGKVNSAEITKPDDLTRPDGIIHGIERLLIPRSVQEDFNRRRSLRSIAAVLPEGAPEVDPRTHRLKKKPAPIPAGAPPVLPVYDAMSPGPSLAPAPAPGPGGPRHHFNGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVL 289          
The following BLAST results are available for this feature:
BLAST of CF832002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FLA17_ARATH9.656e-9166.67Fasciclin-like arabinogalactan protein 17 OS=Arabi... [more]
FLA18_ARATH6.477e-8765.90Fasciclin-like arabinogalactan protein 18 OS=Arabi... [more]
FLA16_ARATH2.721e-8565.10Fasciclin-like arabinogalactan protein 16 OS=Arabi... [more]
FLA15_ARATH5.674e-8363.92Fasciclin-like arabinogalactan protein 15 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01C11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832002 ID=CF832002; Name=CF832002; organism=Citrus sinensis; type=EST; length=768bp
CTCGCATTACACTGAACTGGCCGAGCTAGTTGAAAAGGCTCTCCTGTTAC
AGACCCTCGAAGAAGCCGTCGGCAGACACAACATTACCATTTTTGCCCCT
AAGAACGAAGCGCTAGAGCGCGAGCTCGACCCGGAGTTCAAGCGGTTCTT
ACTCGAACCCGGCAACCTCAAGTCCTTACAGACCCTCTTGATGTTCCACA
TTCTCCCCAGCCGAATCGGATCCCGCAACTGGCCCGACGAGAAATCCGGC
TCCAGAAAGCACAACACTCTCTGGAACGATTTCGTCCACTTGTCCAGCAA
GAGCACTAAAAGACTCATCGGTTCGGCTGAGATTTTCCGACCCGACGACA
TTACCCGTCCCGACGGTGTAATCCACGGAATCGAGCGGCTGTTAGTCCCG
CGATCGGTACAAGAGGACTTCAACCGCAGGCGGAATCTCCGTTCCATTTC
CGCCGTGCTTCCGCAAGGCGCGCCGGAGGTGGACCCCAGGACTCACCGTT
TGAAGAAACCGGCCGCTCCGGTTCCGGCTGGTGCCCCTCCGATTCTTCCT
ATATACGACGCGATGGCTCCCGGTCCCTCGCTAGCACCGGCTCCGGCTCC
AGGACCCGGCGGAGCGCACCGTCATTTCAACGGCGAGAGGCAGGTGAAGG
ATTTCATTCACACGCTGTTGCATTACGGAGGGTACAACGAAATGGCGGAT
ATTCTGGTGAACTTGACGTCGTTAGCGACGGAAATGGGCCGTTTGGTGTC
CGAGGGTTACGTGCTGAC
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