CF832051

Overview
NameCF832051
Unique NameCF832051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832051 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = -2
Query:  212 LGNFVKATFECLLKTYGFLTQDLWRETRFVKSPYQEYTDVFTPKPINKAVIAEVDQGE 385
            LGNFVKATF+CL KTYGFLT + W+ETRF +SPYQE+TD  + K ++   +  + +GE
Sbjct:  226 LGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATKV--ITEGE 281          
BLAST of CF832051 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = -2
Query:  212 LGNFVKATFECLLKTYGFLTQDLWRETRFVKSPYQEYTDVFTPKPINKAVIAEVDQGE 385
            LGNFVKATF+CL KTYGFLT + W+ETRF +SPYQE+TD  + K ++   +  + +GE
Sbjct:  226 LGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATKV--ITEGE 281          
BLAST of CF832051 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = -2
Query:  218 LGNFVKATFECLLKTYGFLTQDLWRETRFVKSPYQEYTDVFTPKPINKAVIAEVDQ 385
            LGNFVKATF+CL KTYGFLT + W+ETRF KSPYQE+TD     P  K     VD+
Sbjct:  218 LGNFVKATFDCLQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIPPGVKISEVVVDK 273          
BLAST of CF832051 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = -2
Query:  245 LGNFVKATFECLLKTYGFLTQDLWRETRFVKSPYQEYTDVFTPKPIN 385
            LGNFVKATF+CL KTYGFLT + W+ETRF +SPYQE+TD    K ++
Sbjct:  227 LGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLASKALS 273          
The following BLAST results are available for this feature:
BLAST of CF832051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RS22_ARATH1.618e-1356.9040S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]
RS21_ARATH1.618e-1356.9040S ribosomal protein S2-1 OS=Arabidopsis thaliana... [more]
RS24_ARATH4.708e-1362.5040S ribosomal protein S2-4 OS=Arabidopsis thaliana... [more]
RS23_ARATH4.708e-1365.9640S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01D19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832051 ID=CF832051; Name=CF832051; organism=Citrus sinensis; type=EST; length=386bp
TTTTTTAGCCAATGATAAATAAACGCCCATTCAAAAAAACTCTCCCCGTT
AAACTTTAAAACAAACAATTGGGTCCCCAAATAACCCCCTTCTAATCCTG
CAGAAATGAAAAACAAAAGAGCCTGTAACAAACAAAGCTATACTATAAAG
TCAACCAAAATGCCTTTCATTCTAATGCTCTCCTCTCCATGCATCCTTAA
GTAGCTTAAGGTTCACCTTGATCAACTTCTGCGATGACTGCCTTGTTGAT
GGGCTTTGGCGTAAAAACATCTGTGTACTCTTGGTATGGAGATTTCACAA
AACGAGTCTCCCTCCATAAATCCTGGGTAAGGAATCCATATGTCTTCAAC
AAACACTCAAAGGTTGCCTTGACAAAGTTTCCAAGA
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