CF832058

Overview
NameCF832058
Unique NameCF832058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12693 contig Csv1_Contig12693:146..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.260e-58
Identity = 110/133 (82.71%), Postives = 119/133 (89.47%), Query Frame = 1 
Query:   31 MAVPLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            MAVPLLT K+V         PQSDR+I+VKE+WRRPKGIDSRVRRKFKG  LMPN+GYGSDKKTRHYLPNGFKKFVVHN +ELELLMMHNRTYCAEIAHNVSTKKRK IVERA+QLDVVVTN+LARLRSQE+E
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133
[Close]
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.169e-58
Identity = 107/133 (80.45%), Postives = 118/133 (88.72%), Query Frame = 1 
Query:   31 MAVPLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            MAVPLLT K+V         PQSDR+I+VKE+WRRPKGIDSRVRRKFKG  LMPN+GYGSDKKTRHYLPNGFKKF+VHN +ELELLMMHNRTYCAEIAHN+STKKRK IVERA+QLDVVV+NKL RLRSQE+E
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133
[Close]
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.551e-43
Identity = 84/130 (64.62%), Postives = 104/130 (80.00%), Query Frame = 1 
Query:   40 PLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            PL+  KIV          QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:    6 PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 2.551e-43
Identity = 84/130 (64.62%), Postives = 104/130 (80.00%), Query Frame = 1 
Query:   40 PLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            PL+  KIV          QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:    6 PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_MOUSE (60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.551e-43
Identity = 84/130 (64.62%), Postives = 104/130 (80.00%), Query Frame = 1 
Query:   40 PLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            PL+  KIV          QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:    6 PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_MACFA (60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 2.551e-43
Identity = 84/130 (64.62%), Postives = 104/130 (80.00%), Query Frame = 1 
Query:   40 PLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            PL+  KIV          QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:    6 PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.551e-43
Identity = 84/130 (64.62%), Postives = 104/130 (80.00%), Query Frame = 1 
Query:   40 PLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            PL+  KIV          QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:    6 PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_BOVIN (60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 3.332e-43
Identity = 83/130 (63.85%), Postives = 104/130 (80.00%), Query Frame = 1 
Query:   40 PLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            PL+  KIV          QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + +TN  ARLRS+E E
Sbjct:    6 PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135
[Close]
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.284e-42
Identity = 85/130 (65.38%), Postives = 97/130 (74.62%), Query Frame = 1 
Query:   40 PLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            P+    IV          QSDR   +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LPNGF+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL + VTN  ARLRSQE E
Sbjct:    5 PVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134
[Close]
BLAST of CF832058 vs. ExPASy Swiss-Prot
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.284e-42
Identity = 83/130 (63.85%), Postives = 101/130 (77.69%), Query Frame = 1 
Query:   40 PLLTTKIVXXXXXXXXXPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 429
            PL   KIV          QSDR + ++ NWR+P+GID+RVR  FKG +LMPNIGYGS+KKT+H LP+GFKKF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:    6 PLTKPKIVKKRTKKFIRHQSDRYVKIRRNWRKPRGIDNRVRSGFKGQMLMPNIGYGSNKKTKHMLPSGFKKFLVHNVKELEVLLMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135
The following BLAST results are available for this feature:
BLAST of CF832058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL321_ARATH1.260e-5882.7160S ribosomal protein L32-1 OS=Arabidopsis thalian... [more]
RL322_ARATH8.169e-5880.4560S ribosomal protein L32-2 OS=Arabidopsis thalian... [more]
RL32_RAT2.551e-4364.6260S ribosomal protein L32 OS=Rattus norvegicus GN=... [more]
RL32_PIG2.551e-4364.6260S ribosomal protein L32 OS=Sus scrofa GN=RPL32 P... [more]
RL32_MOUSE2.551e-4364.6260S ribosomal protein L32 OS=Mus musculus GN=Rpl32... [more]
RL32_MACFA2.551e-4364.6260S ribosomal protein L32 OS=Macaca fascicularis G... [more]
RL32_HUMAN2.551e-4364.6260S ribosomal protein L32 OS=Homo sapiens GN=RPL32... [more]
RL32_BOVIN3.332e-4363.8560S ribosomal protein L32 OS=Bos taurus GN=RPL32 P... [more]
RL32_SPOFR6.284e-4265.3860S ribosomal protein L32 OS=Spodoptera frugiperda... [more]
RL32_ICTPU6.284e-4263.8560S ribosomal protein L32 OS=Ictalurus punctatus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01D23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832058 ID=CF832058; Name=CF832058; organism=Citrus sinensis; type=EST; length=655bp
GCAGAAGCCGCCGCTCATCGTTTCAGAAAAATGGCTGTTCCTTTGCTGAC
CACGAAGATAGTGAAGAAGCGTTTCAAGAAGTTCAAGAGGCCCCAGAGTG
ACAGGAAGATATCAGTGAAGGAAAATTGGCGAAGGCCGAAGGGTATTGAT
TCACGTGTCAGGAGAAAGTTCAAAGGATGTGTTCTGATGCCCAATATTGG
CTACGGCTCGGACAAGAAAACACGCCACTATCTGCCCAATGGATTCAAGA
AGTTTGTTGTGCACAATGTCAATGAACTGGAACTCTTGATGATGCACAAC
AGGACTTATTGTGCTGAGATAGCCCACAACGTATCAACCAAGAAGAGAAA
GGAGATTGTCGAGCGTGCTGCACAATTGGATGTTGTGGTCACCAACAAAT
TGGCCAGGTTGCGCAGCCAGGAGGAGGAGTAAAAATTGGTTTCTATATTG
TGTTAGTGTTTGCTTTTTGGCCAAATGTTTCCTAGGTTGTCTTTGGAATG
GATGAACATTTCCAGGGTTGAATTATGATGTATTTTCTATTTTTGTCACC
TGAATGATATTTTGAATTTGTTGTTTTTTGCGGAGCATGATTAATGTTAT
GTCAACTTAGGAGTTAAGGTTTATGGCCAAGCCTTTTATTAAAAAAAAAA
AAAAA
back to top