CF832066

Overview
NameCF832066
Unique NameCF832066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:325..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.853e-80
Identity = 138/148 (93.24%), Postives = 144/148 (97.30%), Query Frame = 1 
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            GKKATLMVGNVLP+RSIPEGAVVCNVEH VGDRGV AR SGDYA++ISHNPDN TTRVKLPSGAKKI+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:   91 GKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238
[Close]
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 296.975 bits (759), Expect = 7.853e-80
Identity = 134/148 (90.54%), Postives = 147/148 (99.32%), Query Frame = 1 
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            GKKATL+VGNVLP+RSIPEGAV+CNVEHHVGDRGV ARASGDYA++I+HNPDNDT+R+KLPSG+KKI+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG+KVGLI
Sbjct:   91 GKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLI 238
[Close]
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.340e-79
Identity = 136/148 (91.89%), Postives = 147/148 (99.32%), Query Frame = 1 
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            GKKATL+VGNVLP+RSIPEGAVVCNVEHHVGDRGVLARASGDYA++I+HNPD+DTTR+KLPSG+KKI+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRN WPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:   91 GKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238
[Close]
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.648e-77
Identity = 133/148 (89.86%), Postives = 141/148 (95.27%), Query Frame = 1 
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            GKKATLMVGNVLP+RSIPEGAVVCNVEH VGDRGV AR SG YA++ISHNPDN TTR+KLPSG+KKI+PSGCR MIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV RDAPPGQKVGLI
Sbjct:   91 GKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGAYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRRMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVARDAPPGQKVGLI 238
[Close]
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 1.485e-70
Identity = 123/148 (83.11%), Postives = 135/148 (91.22%), Query Frame = 1 
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            GKKA LMVGNVLP+ SIPEGAV+CNVE HVGDRG LARASGDYA++I+HNP+++TTRVKLPSG+KKI+PS CRAMIGQVAGGGRTEKP LKAGNAYHK++ KRNCWP VRGVAMNPVEHPHGGGNHQHIGHASTVRRD   G KVG I
Sbjct:   92 GKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQI 239
[Close]
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 3.315e-62
Identity = 108/148 (72.97%), Postives = 126/148 (85.14%), Query Frame = 1 
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            G++A L +GNVLP+  +PEG +VCN+E   GDRG LAR SG+YA +I+HNPD   TRVKLPSGAKK++PS  RAMIG VAGGGR +KP+LKAG AYHK++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:   91 GRRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMIGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238
[Close]
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.645e-61
Identity = 107/148 (72.30%), Postives = 125/148 (84.46%), Query Frame = 1 
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            GK+A L +GNVLP+  +PEG +VCN+E   GDRG LAR SG+YA +I+HNPD   TRVKLPSGAKK++PS  RAM+G VAGGGR +KP+LKAG AY K++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:   91 GKRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238
[Close]
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.376e-60
Identity = 107/148 (72.30%), Postives = 125/148 (84.46%), Query Frame = 1 
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            GKKATL VGNV+PV ++PEG +VCN+E  +GDRG LARASG++A +I HNPD   TRVKLPSGAKK++PS  R M+G VAGGGR +KP+LKAG AYHK++VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLI
Sbjct:   91 GKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238
[Close]
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.376e-60
Identity = 107/148 (72.30%), Postives = 125/148 (84.46%), Query Frame = 1 
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            GKKATL VGNV+PV ++PEG +VCN+E  +GDRG LARASG++A +I HNPD   TRVKLPSGAKK++PS  R M+G VAGGGR +KP+LKAG AYHK++VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLI
Sbjct:   91 GKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLI 238
[Close]
BLAST of CF832066 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.376e-60
Identity = 104/148 (70.27%), Postives = 126/148 (85.14%), Query Frame = 1 
Query:   19 GKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 462
            G KA + +GN++PV ++PEG  +CNVE+  GDRGV+ARASG+YA +I+HNPD   TR++LPSGAKK++ S  RAMIG VAGGGRT+KPLLKAG +YHK++ KRN WP+VRGVAMNPVEHPHGGGNHQHIGH STVRRDA  G+KVGLI
Sbjct:   91 GAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLI 238
The following BLAST results are available for this feature:
BLAST of CF832066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_SOLLC7.853e-8093.2460S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL83_ARATH7.853e-8090.5460S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL81_ARATH1.340e-7991.8960S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL8_TOBAC3.648e-7789.8660S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL82_ARATH1.485e-7083.1160S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_ANOGA3.315e-6272.9760S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_AEDAL1.645e-6172.3060S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL8_SPOFR2.376e-6072.3060S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]
RL8_MAMBR2.376e-6072.3060S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL8_CAEEL2.376e-6070.2760S ribosomal protein L8 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832066 ID=CF832066; Name=CF832066; organism=Citrus sinensis; type=EST; length=781bp
GTCAGTTCGTGCACTGTCGGCAAGAAAGCCACTCTGATGGTTGGTAATGT
GTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGC
ATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCC
GTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCC
ATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGC
AGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAAT
GCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGG
TGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGC
ACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAG
GTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGC
TGCCACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAA
ATCGTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTA
CCTTGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTA
AATTATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTA
GTTGATTTTGATATTTTTGGATATATTAATGGATGCCTTCATCAAATTAA
GTAAATGGAAATGTTGTTTTTATCTGAAAAA
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