CF832070

Overview
NameCF832070
Unique NameCF832070
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832070 vs. ExPASy Swiss-Prot
Match: TOM20_SOLTU (Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.270e-65
Identity = 122/197 (61.93%), Postives = 150/197 (76.14%), Query Frame = 3
Query:   21 LQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL--XXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPP 605
            +QS+FDRLL  EH RK+AE  YA++PLDADNLTRWG ALLELSQF+ V++SK++I++A SK EEAL ++P KH  LW LGNAHTS  FLT D+ EAK  F+KA++CFQ+A D +P+N+LY+KSLEV+ KAPELHME+H+HG  QQT+                   DLKYDIFGWVILAVGIVAWVG A S +PPPP
Sbjct:    3 MQSEFDRLLFFEHARKSAETTYAQNPLDADNLTRWGGALLELSQFQPVAESKQMISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDADPSNDLYRKSLEVTAKAPELHMEIHRHGPMQQTMAAEPSTSTSTKSSKKTKSSDLKYDIFGWVILAVGIVAWVGFAKSNMPPPP 199          
BLAST of CF832070 vs. ExPASy Swiss-Prot
Match: TO203_ARATH (Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana GN=TOM20-3 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.174e-52
Identity = 102/199 (51.26%), Postives = 134/199 (67.34%), Query Frame = 3
Query:   24 QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL---XXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 611
            +++FDR+LL E  R+ AE  Y  +PLDADNLTRWG  LLELSQF S+SD+K++I EAI+KFEEAL+IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  Y KSLE++ KAP+LH E +K G+  Q +                    D KYD  GWVILA+G+VAW+  A + +P  P R
Sbjct:    4 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSSKAVKNKKSSDAKYDAMGWVILAIGVVAWISFAKANVPVSPPR 202          
BLAST of CF832070 vs. ExPASy Swiss-Prot
Match: TO202_ARATH (Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana GN=TOM20-2 PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 2.057e-51
Identity = 102/205 (49.76%), Postives = 132/205 (64.39%), Query Frame = 3
Query:   27 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL----------XXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 611
            +DF+RL++ EH RK +EA Y  DPLD++NL +WG ALLELSQF+ + ++K ++N+AISK EEAL I+P KH  LW + NA+T+  F   D  EAK  FDKA+E FQRA +E+P N+ Y+KSL+ S KAPELHM+    G+ QQ L                           +  YD+ GW+ILA GIVAWVGMA S  PPPPAR
Sbjct:    6 ADFERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRNTEFTYDVCGWIILACGIVAWVGMAKSLGPPPPAR 210          
BLAST of CF832070 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSI (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica GN=TOM20 PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 4.015e-47
Identity = 95/195 (48.72%), Postives = 125/195 (64.10%), Query Frame = 3
Query:   27 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 611
            SD +R+   +   + A+  Y ++P DADNLTRWG ALLELSQ  +  +S K + +A SK EEAL IDP K   LW LGNA TS GF T+D  +A   F+KA++CFQ+AVD EP N+LY+KSL++S+KAPELHME+H+   +Q +                  D  YD+FGWV+L VG+V WVG+A S  PP   R
Sbjct:    7 SDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQAASSTSNTRQSRKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAPR 201          
BLAST of CF832070 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSJ (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica GN=TOM20 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.573e-46
Identity = 95/196 (48.47%), Postives = 125/196 (63.78%), Query Frame = 3
Query:   27 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT-LXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIPPPPAR 611
            SD +R+   +   + A+  Y ++P DADNLTRWG ALLELSQ  +  +S K + +A SK EEAL IDP K   LW LGNA TS GF T+D  +A   F+KA++CFQ+AVD EP N+LY+KSL++S+KAPELHME+H+   +Q +                   D  YD+FGWV+L VG+V WVG+A S  PP   R
Sbjct:    7 SDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQAASSTSNTRQSRKKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAPR 202          
BLAST of CF832070 vs. ExPASy Swiss-Prot
Match: TO204_ARATH (Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana GN=TOM20-4 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.878e-45
Identity = 96/192 (50.00%), Postives = 128/192 (66.67%), Query Frame = 3
Query:   21 LQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSRIP 596
            +Q++ +RL++ EH RK AEA Y K+PLDA+NLTRW  ALLELSQF++  + K++I EAI K  EALVIDP KH  LW +GNAH S GFL++D +EA  +F+KAS+ FQ AV+E+P +ELY+KSL +++KAPELH                              + KYD+FGWVILA  +VAW+  ANS+ P
Sbjct:    3 MQNENERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQT--EPKQMILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYRKSLTLASKAPELHTG---------GTAGPSSNSAKTMKQKKTSEFKYDVFGWVILASYVVAWISFANSQTP 183          
BLAST of CF832070 vs. ExPASy Swiss-Prot
Match: TO201_ARATH (Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana GN=TOM20-1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.096e-36
Identity = 85/187 (45.45%), Postives = 114/187 (60.96%), Query Frame = 3
Query:   36 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT--LXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGMANSR 590
            D+L   E  RK AE  Y  +P DADNL RWGEALLELSQF++V DS K+I +AISK E+A++IDP KH  +W LGNA+TS   LT D ++A+ +F  A   F  AV ++P N++Y KSLE++ KAP+LH   HK+ +      +                 D KY + GWVILA+G+VA +     R
Sbjct:    2 DKLNFFEEIRKDAEETYKLNPEDADNLMRWGEALLELSQFQNVIDSLKMIQDAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQQPDNQVYHKSLEMADKAPQLHTGFHKNRLLSLLGGVETLAIPSPKVVKNKKSSDEKYIVMGWVILAIGVVACISFRKLR 188          
The following BLAST results are available for this feature:
BLAST of CF832070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TOM20_SOLTU3.270e-6561.93Mitochondrial import receptor subunit TOM20 OS=Sol... [more]
TO203_ARATH3.174e-5251.26Mitochondrial import receptor subunit TOM20-3 OS=A... [more]
TO202_ARATH2.057e-5149.76Mitochondrial import receptor subunit TOM20-2 OS=A... [more]
TOM20_ORYSI4.015e-4748.72Probable mitochondrial import receptor subunit TOM... [more]
TOM20_ORYSJ7.573e-4648.47Probable mitochondrial import receptor subunit TOM... [more]
TO204_ARATH2.878e-4550.00Mitochondrial import receptor subunit TOM20-4 OS=A... [more]
TO201_ARATH1.096e-3645.45Mitochondrial import receptor subunit TOM20-1 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01E06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832070 ID=CF832070; Name=CF832070; organism=Citrus sinensis; type=EST; length=792bp
GAATCCTCAGACCTGTAATTCTCCAAAGCGATTTCGATCGGCTCTTGTTG
TCCGAACACAATCGTAAAACAGCTGAAGCTAATTACGCCAAAGACCCTCT
CGATGCTGACAATCTCACAAGGTGGGGAGAAGCATTGCTTGAATTGTCTC
AATTTGAAAGTGTCTCTGACTCCAAGAAGATAATAAATGAAGCCATTTCA
AAATTTGAGGAGGCTTTAGTGATAGATCCTGCAAAGCATTATACTTTATG
GAGTCTCGGAAATGCTCACACCTCTTGTGGATTTTTGACTGCCGATCTCT
CTGAGGCAAAAGGTGATTTTGATAAGGCGTCAGAGTGTTTCCAAAGAGCA
GTAGATGAGGAACCAACTAATGAGCTCTATCAGAAATCTTTAGAAGTCAG
TACTAAGGCACCGGAACTGCACATGGAGCTCCATAAACATGGAATTAATC
AGCAGACTCTCGGTGGAGGATCTTCTGCTTCTAATGCACAGAGTTCCAAG
AAGAAGAGCAGTGATCTAAAGTACGATATATTTGGATGGGTAATCCTTGC
TGTTGGAATTGTTGCATGGGTTGGAATGGCAAACTCCCGCATTCCACCAC
CTCCTGCAAGATAGGCTTTACATATGCTCGTTCTTTGAGATAACCATGTT
GGGGCATTTTAGCAAAGGATTTTCCGAGGATGAGATCAGTTTTGTGGACT
AGTGCATGTGTTATGCTACCATATGTTGATTTTACCCCACAATGTTTTCC
ATCAGTCATTTAAGTAGGATTATTACTTTTGACACACATTGT
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