CF832091

Overview
NameCF832091
Unique NameCF832091
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6956 contig Csv1_Contig6956:1142..1882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832091 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.384e-65
Identity = 118/163 (72.39%), Postives = 137/163 (84.05%), Query Frame = -2
Query:  273 WFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYPLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKVN 761
            WFL+ISP+GKVPV+K DDKWV DSDVIV I+EEKYP+P L  P EFASVGS IF +F  FLKSKD NDG+E ALL EL+AL+ HLK+H GPFIAGE+V+AVDLSLAPKLY LQVAL HFK W+VPES  HVH Y K LF+L+SF+KTK E++YVI+GW PKVN
Sbjct:   50 WFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWAPKVN 212          
BLAST of CF832091 vs. ExPASy Swiss-Prot
Match: CLIC1_HUMAN (Chloride intracellular channel protein 1 OS=Homo sapiens GN=CLIC1 PE=1 SV=4)

HSP 1 Score: 72.0182 bits (175), Expect = 3.956e-12
Identity = 47/167 (28.14%), Postives = 82/167 (49.10%), Query Frame = -2
Query:  321 EISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYPLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 752
            ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:   57 KLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CF832091 vs. ExPASy Swiss-Prot
Match: CLIC1_RAT (Chloride intracellular channel protein 1 OS=Rattus norvegicus GN=Clic1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.747e-12
Identity = 47/167 (28.14%), Postives = 81/167 (48.50%), Query Frame = -2
Query:  321 EISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYPLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 752
            ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:   57 KLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CF832091 vs. ExPASy Swiss-Prot
Match: CLIC1_MOUSE (Chloride intracellular channel protein 1 OS=Mus musculus GN=Clic1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.747e-12
Identity = 47/167 (28.14%), Postives = 81/167 (48.50%), Query Frame = -2
Query:  321 EISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYPLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 752
            ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:   57 KLCPGGQLPFLLYGTEVHTDTNKIEEFLEAMLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CF832091 vs. ExPASy Swiss-Prot
Match: CLIC1_BOVIN (Chloride intracellular channel protein 1 OS=Bos taurus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 45/167 (26.95%), Postives = 82/167 (49.10%), Query Frame = -2
Query:  321 EISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYPLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 752
            ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +++P+    VH Y +  +A E F  T
Sbjct:   57 KLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPDEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFSIPDVFRGVHRYLRNAYAREEFAST 222          
BLAST of CF832091 vs. ExPASy Swiss-Prot
Match: CLIC1_RABIT (Chloride intracellular channel protein 1 OS=Oryctolagus cuniculus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11
Identity = 47/167 (28.14%), Postives = 80/167 (47.90%), Query Frame = -2
Query:  321 EISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYPLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 752
            ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  +  + +T+PE    VH Y    +A E F  T
Sbjct:   57 KLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGVDIFAKFSAYIKNSNPALNDNLEKGLLKALKILDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKNRGFTIPEVFRGVHRYLSNAYAREEFAST 222          
The following BLAST results are available for this feature:
BLAST of CF832091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DHAR1_ARATH1.384e-6572.39Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
CLIC1_HUMAN3.956e-1228.14Chloride intracellular channel protein 1 OS=Homo s... [more]
CLIC1_RAT6.747e-1228.14Chloride intracellular channel protein 1 OS=Rattus... [more]
CLIC1_MOUSE6.747e-1228.14Chloride intracellular channel protein 1 OS=Mus mu... [more]
CLIC1_BOVIN3.349e-1126.95Chloride intracellular channel protein 1 OS=Bos ta... [more]
CLIC1_RABIT5.712e-1128.14Chloride intracellular channel protein 1 OS=Orycto... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01E19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832091 ID=CF832091; Name=CF832091; organism=Citrus sinensis; type=EST; length=762bp
TTTTTTTTTTTCATTAAATGGAACTTGGATTTGACAAAATCCAATGGATT
TAAACCATTTAATACCCGTAGGAGATATCCAGGAACTAAGAGTAAATACC
ATTCAACCAGGAGGTTTCATTATAACAAATAGCAAATATCATCGTAGCCA
CCTTTATTGGATGATACAAACCCCCAGTGAACATTCTAATTATGCTCCAA
GTCTCACACATACATTACTCGCATTTCATTAGCTAGATTTCAAACACCGC
ATAGCTTAAAACTAGTTCATGCATTGACCTTCGGCACCCATCCTGCAATC
ACGTATTGCTTTTCAGCCTTAGTCTTCTGAAAGGATTCCAGAGCAAAAAG
CTTCTTCGTGTACCCATGGACATGAGCCAAGCTCTCAGGGACAGTCCACT
GCTTGAAATGTTCAAGAGCTACCTGAAGGGGGTACAGCTTTGGTGCCAAG
CTCAAATCTACAGCAGTGACCTTCTCTCCAGCAATGAATGGACCTCCATG
AGTCTTAAGATGCTCATCCAATGCTTTCAATTCCTCCAGCAAAGCTTGCT
CTGTCCCATCATTTGGGTCCTTGCTCTTCAAGAAATTGACAAAAGATGGG
AATATCTTTGATCCAACAGAGGCAAATTCAGGAGGATTAGTAAGAGAAGG
CTCAGGATACTTCTCCTCAATAATTCTAACAATCACATCAGAGTCAGCCA
CCCACTTGTCATCAAACTTTACCACAGGTACTTTCCCTTCTGGGCTTATC
TCCAAAAACCAT
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