CF832124

Overview
NameCF832124
Unique NameCF832124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1212 contig Csv1_Contig1212:317..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF832124 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.860e-25
Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = 3 
Query:    9 KLTKYTNLKHREYGAIADCLDEMGDTADRLNKSVQELNHMGRAKGQDFLWHMTNVETWVSAALTDDNTCTDGFGGKALEGKDKSSXXXXXXXXXXXXXXXLSLINKFAGKH 341
            +L K+  LK R+Y AI DCL+E+ D+ DR+++S  E+ ++  AKG DF + M+NVETWVSAALTD+ TC DGF GK ++GK K S               L+L+N FA KH
Sbjct:   81 RLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAKH 191
The following BLAST results are available for this feature:
BLAST of CF832124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA1.860e-2547.7521 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01F17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832124 ID=CF832124; Name=CF832124; organism=Citrus sinensis; type=EST; length=404bp
TCGTGACCAAGCTGACGAAGTACACGAACCTGAAGCACAGAGAGTATGGG
GCAATTGCCGACTGCTTAGATGAGATGGGTGACACTGCGGACCGGCTCAA
CAAGTCGGTTCAGGAGCTGAACCACATGGGTCGGGCCAAGGGTCAGGACT
TTCTGTGGCACATGACCAACGTTGAGACATGGGTTAGTGCTGCTTTGACT
GATGACAACACTTGTACTGATGGGTTCGGTGGCAAGGCCTTGGAGGGTAA
GGATAAGTCCTCTGTTAGGGCTCAGGTTGTTAATGTTGCTCAGGTCACTA
ACAATGCCCTTTCACTGATCAATAAGTTTGCTGGGAAACACTGAGCCGTA
TTTAACTATATGGCTGTGTGAATGTTTTGCGAGAGTTTGTGTCTTTTTTA
TCTT
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