CF832125

Overview
NameCF832125
Unique NameCF832125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1212 contig Csv1_Contig1212:60..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832125 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.992e-53
Identity = 101/172 (58.72%), Postives = 132/172 (76.74%), Query Frame = -2
Query:  170 AAGIADTRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRTLKHREYGAIADCLDEMGDTVARLSKSVQELTHMGRAKGQDFLCHMSNVETWVSAAFTDENTCTDGFGGKPLEGKVKSSVRAQVVNVAQVTSNALSLINKFAGKH 685
            A+     +FI++SC  TTYPA+C QSLSAYA +IQ +P++LA TAL VSL+R Q A++F+ +L KF+ LK R+Y AI DCL+E+ D++ R+S+S  E+ ++  AKG DF   MSNVETWVSAA TDE TC DGF GK ++GK+K SVRAQVV VA+VTSNAL+L+N FA KH
Sbjct:   20 ASAAPANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAKH 191          
BLAST of CF832125 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.473e-14
Identity = 48/158 (30.38%), Postives = 86/158 (54.43%), Query Frame = -2
Query:  191 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRTLKHREYGAIADCLDEMGDTVARLSKSVQELTHMGRAKGQDFLCHMSNVETWVSAAFTDENTCTDGFGGKPLEGKVKSSVRAQVVNVAQVTSNALSLI 658
            ++SSC ST YP LC  +++A   + ++   Q  V  +S++++      ++  + KL K   L  RE  A+ DCL+ + +T+  L K+V++L      K      H  +++T +SAA T++ TC DGF        V+ ++    V+V ++ SNAL++I
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQ--HADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of CF832125 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.473e-14
Identity = 48/158 (30.38%), Postives = 86/158 (54.43%), Query Frame = -2
Query:  191 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRTLKHREYGAIADCLDEMGDTVARLSKSVQELTHMGRAKGQDFLCHMSNVETWVSAAFTDENTCTDGFGGKPLEGKVKSSVRAQVVNVAQVTSNALSLI 658
            ++SSC ST YP LC  +++A   + ++   Q  V  +S++++      ++  + KL K   L  RE  A+ DCL+ + +T+  L K+V++L      K      H  +++T +SAA T++ TC DGF        V+ ++    V+V ++ SNAL++I
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQ--HADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of CF832125 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.779e-13
Identity = 48/172 (27.91%), Postives = 92/172 (53.49%), Query Frame = -2
Query:  146 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKL-RKFRTLKHREYGAIADCLDEMGDTVARLSKSVQELTHMGRAKGQDFLCHMSNVETWVSAAFTDENTCTDGFGGKPLEGKVKSSVRAQVVNVAQVTSNALSLINKFAGKH*AVFNYMA 658
            +RSSC ST YP LC+ ++         S + +   +++++++  +     V KL +K + L  RE  A+ DCL+ + +T+  L ++V++L H+   K +    H  +++T +S+A T++ TC DGF     + +V+ ++    ++V  + SNAL++I        A F   A
Sbjct:   59 LRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDL-HLYPTK-KTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMIKNMTDTDIANFEQKA 228          
BLAST of CF832125 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.740e-13
Identity = 47/168 (27.98%), Postives = 86/168 (51.19%), Query Frame = -2
Query:  191 VTAAGIADTRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKL-RKFRTLKHREYGAIADCLDEMGDTVARLSKSVQELTHMGRAKGQDFLCHMSNVETWVSAAFTDENTCTDGFGGKPLEGKVKSSVRAQVVNVAQVTSNALSLI 691
            +T         ++S C ST YP LC  +++A       S +++   +L+++    +     V KL  K + L  RE  A+ DCL+ + +T+  L  +V++L    + K      H  +++T +S+A T++ TC DGF     + KV+ ++    V+V  + SNAL++I
Sbjct:   51 ITTLSSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKS--LRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMI 216          
BLAST of CF832125 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 51/164 (31.10%), Postives = 76/164 (46.34%), Query Frame = -2
Query:  176 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRTLKHREYGAIADCLDEMGDTVARLSKSVQEL-THMGRAKGQDFLCHMSNVETWVSAAFTDENTCTDGFG--GKPLEGKVKSSVRAQVVNVAQVTSNALSLINKFAG 658
            +++ C +T YP+ C  S+S+   S    P  L   +L V++    S   F +KLR       R   AI  C    GD + RL+ S+  L T  GR         +SNVETW+SAA TD++TC D  G             +   + N  +  SN+L+++ K  G
Sbjct:   77 LKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKLSLRVAIDELSS---FPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASS---ASVSNVETWLSAALTDQDTCLDAVGELNSTAARGALQEIETAMRNSTEFASNSLAIVTKILG 234          
BLAST of CF832125 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 48/169 (28.40%), Postives = 79/169 (46.75%), Query Frame = -2
Query:  182 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRTLKHREYGAIADCLDEMGDTVARLSKSVQELTHMGRAKGQDFLCHMSNVETWVSAAFTDENTCTDG----------FGGKPLEGKVKSSVRAQVVNVAQVTSNALSLINKF 658
            +R+ C  T YPA CV S+S    S    P  L   +L V ++   S      KL +  T   R   +++ C D   D +  ++ ++  +  +G  K       +  ++TW+SAA TD +TC D           +   P+  K+KS+    +VN  + TSN+L++I KF
Sbjct:  271 LRNVCSVTRYPASCVSSISKLPSSNTTDPEALFRLSLQVVINELNSIAGLPKKLAE-ETDDERLKSSLSVCGDVFNDAIDIVNDTISTMEEVGDGKKILKSSTIDEIQTWLSAAVTDHDTCLDALDELSQNKTEYANSPISLKLKSA----MVNSRKFTSNSLAIIAKF 434          
BLAST of CF832125 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 48/158 (30.38%), Postives = 81/158 (51.27%), Query Frame = -2
Query:  188 IRSSCKSTTYPALCVQSLSAYAPSIQ-QSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRTLKHREYGAIADCLDEMGDTVARLSKSVQELTHMGRAKGQDFLCHMSNVETWVSAAFTDENTCTDGFGGKPLEGKVKSSVRAQVVNVAQVTSNALSLIN 658
            I  +C+ T +P LCV SL  +  S+   S + L    ++++L     A      L  F  +  R   A   C++ + D+V  LS+++  +     AK QD       V TW+SAA T+ +TCT+GF G   +G VK  + A + N++++ SN L++ +
Sbjct:   87 ISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASL-SFVDMPPRARSAYDSCVELLDDSVDALSRALSSVVSSS-AKPQD-------VTTWLSAALTNHDTCTEGFDGVD-DGGVKDHMTAALQNLSELVSNCLAIFS 234          
The following BLAST results are available for this feature:
BLAST of CF832125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
21KD_DAUCA7.992e-5358.7221 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME3_CITSI1.473e-1430.38Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI1.473e-1430.38Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME3_ARATH2.779e-1327.91Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME2_ARATH4.740e-1327.98Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_PHAVU2.352e-1231.10Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME26_ARATH1.991e-1128.40Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME34_ARATH5.794e-1130.38Probable pectinesterase/pectinesterase inhibitor 3... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01F18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01F18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832125 ID=CF832125; Name=CF832125; organism=Citrus sinensis; type=EST; length=767bp
TTTTTTTTTTTTTTTTTGCTCATTCCATAAGCTCATTCTTATAGATATGC
ACAAAATCAACACTCACTCAGAACTGATGATTAATTTGTACATTGAAACT
AAACCAAAGATAAAAAAGACACAAACTCTCGCAAAACATTCACACAGCCA
TATAGTTAAATACGGCTCAGTGTTTCCCAGCAAACTTATTGATCAGTGAA
AGGGCATTGCTAGTGACCTGAGCAACATTAACAACCTGAGCCCTAACAGA
GGACTTAACCTTACCCTCCAAGGGCTTGCCACCGAACCCATCAGTACAAG
TGTTCTCATCAGTAAAAGCAGCACTAACCCATGTCTCAACGTTGCTCATG
TGGCACAGAAAGTCCTGACCCTTGGCCCGACCCATGTGGGTCAGCTCCTG
AACCGACTTGCTGAGCCGGGCCACAGTGTCACCCATCTCATCTAAGCAGT
CGGCAATTGCCCCATACTCTCTGTGCTTCAGGGTCCTGAACTTCCTCAGC
TTGGTCACGAATGACTTTGCGGATTGGGCCCTGGAGAGGCTCACGGACAA
GGCTGTGACAGCCAGTTGCCGGGGGCTTTGTTGAATTGATGGGGCATAAG
CTGAGAGAGACTGCACGCATAGCGCTGGATAAGTTGTGGATTTGCAAGAA
CTTCTGATAAATCTTGTGTCAGCAATCCCGGCAGCTGTGACCAAGCTTAT
AATGTAGAGGAGAGAGAGCAATAGCAAAAGACAGCCTGTTTTTGCCATGT
TTTCAGAAACTAATTAA
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