CF832138

Overview
NameCF832138
Unique NameCF832138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.075e-40
Identity = 85/191 (44.50%), Postives = 126/191 (65.97%), Query Frame = -2
Query:  148 KKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVYNVYDNNQXXXXXXXXXXXXXXTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRM 720
            +KRGRKP +GRE PLNHVEAERQRRE+LN RFY+LR+VVPNVSKMDKASLL DA++YI EL++K+ + E+   E  ++  V+     N +                   + I  M+VDVKI+G +AMIR+QC   N+P AK M+ L++L+  V+HAS+S V + M+Q   V++     +++ ++ A+ +++
Sbjct:  401 RKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAESDKEELQKQIDVM-----NKEAGNAKSSVKDRKCLNQESSVLIE-MEVDVKIIGWDAMIRIQCSKRNHPGAKFMEALKELDLEVNHASLSVVNDLMIQQATVKMGNQFFTQDQLKVALTEKV 585          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.993e-39
Identity = 88/191 (46.07%), Postives = 125/191 (65.45%), Query Frame = -2
Query:  148 KKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVYNVYDNNQXXXXXXXXXXXXXXTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRM 720
            KKRGRKP +GRE PLNHVEAERQRRE+LN RFYALR+VVPNVSKMDKASLL DA+AYI EL++KV + E++  +   + + V       +                 +G     M+++VKI+G +AMIRV+    N+PAA+LM  L DLE  V+HAS+S V + M+Q   V++   + ++E +R+++  ++
Sbjct:  437 KKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESEKLQIKNQLEEVKLELAGRKASASGGDMSSSCSSIKPVG-----MEIEVKIIGWDAMIRVESSKRNHPAARLMSALMDLELEVNHASMSVVNDLMIQQATVKMGFRIYTQEQLRASLISKI 622          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.688e-38
Identity = 83/191 (43.46%), Postives = 124/191 (64.92%), Query Frame = -2
Query:  148 KKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVYNVYDNNQXXXXXXXXXXXXXXTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRM 720
            +KRGRKP +GRE PLNHVEAERQRRE+LN RFY+LR+VVPNVSKMDKASLL DA++YI EL++K+ + E+  +E+ +K     +   NN                     +I  M++DVKI+G + MIRVQC   ++P A+ M+ L++L+  V+HAS+S V + M+Q   V++     + + ++ A+  ++
Sbjct:  400 RKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQQAESD-KEEIQKKLDGMSKEGNNGKGCGSRAKERKSSNQDSTASSIE-MEIDVKIIGWDVMIRVQCGKKDHPGARFMEALKELDLEVNHASLSVVNDLMIQQATVKMGSQFFNHDQLKVALMTKV 588          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: BH014_ARATH (Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.979e-35
Identity = 76/177 (42.94%), Postives = 118/177 (66.67%), Query Frame = -2
Query:  148 LNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVYNVYDNNQXXXXXXXXXXXXXXTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRM 678
            L+HVEAE+QRRE+LNHRFYALR++VP VS+MDKASLL+DAV+YI+ L++K+D+LE ++++         +   +N                 + G +   ++V VKIVG EA+IRVQ  ++N+P + LM  L +++  V HA+ S + + M+QDVVV +PEGL SE+ +R+ + + +
Sbjct:  248 LSHVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKSKIDDLETEIKKMKMTETDKLDNSSSNTSPSSVEYQVNQKPSKSNRGSD---LEVQVKIVGEEAIIRVQTENVNHPTSALMSALMEMDCRVQHANASRLSQVMVQDVVVLVPEGLRSEDRLRTTLVRTL 421          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.618e-34
Identity = 83/202 (41.09%), Postives = 120/202 (59.41%), Query Frame = -2
Query:  148 KKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEA----------KLREQARKSKVVYNVYDNNQXXXXXXXXXXXXXXTHHLGININIMDVDVKIVGS-EAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRM 720
            KKRGRKP  GR+ PLNHVEAER RRE+LNHRFYALR+VVPNVSKMDK SLL DAV YI EL++K + +E           +L+E A +   + +V    +                       +M ++VKI+ S +AM+RV+    ++P A+LM+ L DLE  V+HAS+S + + M+Q   V++   +  +E +R  +  ++
Sbjct:  328 KKRGRKPAHGRDKPLNHVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENVELEKHAIEIQFNELKEIAGQRNAIPSVCKYEEKAS-------------------EMMKIEVKIMESDDAMVRVESRKDHHPGARLMNALMDLELEVNHASISVMNDLMIQQANVKMGLRIYKQEELRDLLMSKI 510          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.212e-28
Identity = 73/176 (41.48%), Postives = 102/176 (57.95%), Query Frame = -2
Query:  193 KKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVYNVYDNNQXXXXXXXXXXXXXXTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEG 720
            +KRGRKP +GRE PLNHVEAERQRRE+LN RFYALRSVVPN+SKMDKASLL DA++YIKEL+ KV  +E + R    KS    N     +                         +VD++ +  E ++RV  P  ++PA++++  +R+    +  A +S   +TM    V++   G
Sbjct:  380 RKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDE-RVGTDKSLSESNTITVEESP-----------------------EVDIQAMNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEAKLSLAEDTMFHTFVIKSNNG 531          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.606e-28
Identity = 76/197 (38.58%), Postives = 117/197 (59.39%), Query Frame = -2
Query:  142 NVTSKKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVYNVYDNNQXXXXXXXXXXXXXXTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEVIRSAIFQRMQN 732
            N   +KRGR+P +GR   LNHVEAERQRRE+LN RFYALRSVVPN+SKMDKASLL DAV+YI EL AK+  +EA+ RE+          Y +N                    I+++  D++V+  G +  +R+ CP  ++PA+++     + +  V ++++   ++T+L   VV+  E  +++E + SA+ +   N
Sbjct:  414 NNRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAE-RERLG--------YSSNPP------------------ISLD-SDINVQTSGEDVTVRINCPLESHPASRIFHAFEESKVEVINSNLEVSQDTVLHTFVVKSEE--LTKEKLISALSREQTN 580          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: BH003_ARATH (Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.750e-27
Identity = 70/182 (38.46%), Postives = 105/182 (57.69%), Query Frame = -2
Query:  175 KKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVYNVYDNNQXXXXXXXXXXXXXXTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETMLQDVVVRIPEGLISEEV 720
            +KRGRKP +GRE  LNHVEAERQRRE+LN RFYALR+VVPN+SKMDKASLLADA+ YI +++ K+   E + +   R+        ++NQ                     I   +VD +    +A++R+ CP   +P +K++  LR+ E   H ++V+   E ++    +R   G  +E++
Sbjct:  305 RKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYITDMQKKIRVYETEKQIMKRR--------ESNQ---------------------ITPAEVDYQQRHDDAVVRLSCPLETHPVSKVIQTLRENEVMPHDSNVAITEEGVVHTFTLRPQGGCTAEQL 457          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: BH025_ARATH (Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.301e-14
Identity = 51/178 (28.65%), Postives = 94/178 (52.81%), Query Frame = -2
Query:  226 DINVTSKKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQ-------ARKSKVVYNVYDNNQXXXXXXXXXXXXXXTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASVSSVRETM 738
            + N    KR +  +  + +  +H+ AER+RRE+L  RF AL ++VP + KMDKAS+L DA+ +IK L+ +V ELE + +E+        +KSK++ +  DNNQ                    ++++ +++V+    + +I++ C       AK+M  +  L   + ++SV +   T+
Sbjct:  131 EFNRKGTKRAQPFSRNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYLQERVGELEEQKKERRLESMVLVKKSKLILD--DNNQSFSSSCEDGFS---------DLDLPEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITNSSVLNFGPTL 297          
BLAST of CF832138 vs. ExPASy Swiss-Prot
Match: BH018_ARATH (Transcription factor bHLH18 OS=Arabidopsis thaliana GN=BHLH18 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.899e-14
Identity = 46/168 (27.38%), Postives = 87/168 (51.79%), Query Frame = -2
Query:  247 DINVTSKKRGRKPTSGRESPLNHVEAERQRRERLNHRFYALRSVVPNVSKMDKASLLADAVAYIKELRAKVDELEAKLREQARKSKVVYN----VYDNNQXXXXXXXXXXXXXXTHHLGININIMDVDVKIVGSEAMIRVQCPDINYPAAKLMDVLRDLEFHVHHASV 738
            ++ +   KR +  T  + +  +H+ AER+RRE+L  RF AL +++P + KMDKAS+L DA+ +IK L+  V E E + +E+  +S V+      V D N                +    + N+ +++V++ G + +I++ C        K+M  +  L   + +++V
Sbjct:  105 ELIIRGTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVKEYEEQKKEKTMESVVLVKKSSLVLDENH-----QPSSSSSSDGNRNSSSSNLPEIEVRVSGKDVLIKILCEKQKGNVIKIMGEIEKLGLSITNSNV 267          
The following BLAST results are available for this feature:
BLAST of CF832138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
BH004_ARATH3.075e-4044.50Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
RAP1_ARATH1.993e-3946.07Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
ATR2_ARATH1.688e-3843.46Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
BH014_ARATH2.979e-3542.94Transcription factor bHLH14 OS=Arabidopsis thalian... [more]
BH028_ARATH5.618e-3441.09Transcription factor bHLH28 OS=Arabidopsis thalian... [more]
AIB_ARATH1.212e-2841.48Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Ar... [more]
BH013_ARATH4.606e-2838.58Transcription factor bHLH13 OS=Arabidopsis thalian... [more]
BH003_ARATH1.750e-2738.46Transcription factor bHLH3 OS=Arabidopsis thaliana... [more]
BH025_ARATH1.301e-1428.65Transcription factor bHLH25 OS=Arabidopsis thalian... [more]
BH018_ARATH2.899e-1427.38Transcription factor bHLH18 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01G01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832138 ID=CF832138; Name=CF832138; organism=Citrus sinensis; type=EST; length=841bp
CCTTTTTTTAATCAATTCACATGATAATTATAAGCTGCTACAAAACAAAA
GGCAGTATAATCTGAAAAACGGAAAAAGGACAGAACAAAAAAAAAAAAAC
GGATGCAGTTAATAAGCAAGATCGAGTAGTAAGCTAAACTAGTTTTGCAT
TCTTTGGAAAATAGCACTTCTAATAACCTCTTCACTAATCAATCCCTCGG
GAATCCTGACGACAACATCCTGAAGCATAGTCTCCCTCACGCTTGATACA
CTGGCATGATGAACATGAAACTCAAGATCTCTGAGCACATCCATCAATTT
AGCTGCCGGATAATTGATATCTGGGCATTGAACACGTATCATGGCTTCTG
ATCCTACAATCTTCACATCGACATCCATAATATTAATATTAATGCCAAGA
TGATGAGTAGTCGAAGACGACGTTGGCATCATGATTGTAGAGCCAGTGCT
TTGATTGTTGTCATAAACGTTGTACACCACCTTTGATTTTCTAGCCTGTT
CACGGAGTTTCGCCTCAAGTTCGTCAACCTTGGCCCTGAGCTCTTTGATG
TAGGCAACAGCATCAGCGAGTAAAGAAGCTTTGTCCATTTTGGAAACGTT
TGGAACCACAGAGCGGAGAGCATAGAAGCGATGATTAAGCCTCTCACGGC
GCTGCCTCTCTGCTTCCACGTGGTTGAGAGGAGACTCTCTTCCGCTTGTT
GGCTTTCTTCCTCGTTTTTTGGATGTAACATTAATGTCAGTAAATCCTGA
AACGAAGTGACCGTCTGAGTCAGAAGGCCCCGAATCTGAAGATGAACGGC
CAAAACCAGCAGCTAATTGTTCTTTCTTATTACATCGCCGG
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