CF832173

Overview
NameCF832173
Unique NameCF832173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10550 contig Csv1_Contig10550:364..1057. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM_SOYBN (Phosphomannomutase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.886e-69
Identity = 119/129 (92.25%), Postives = 128/129 (99.22%), Query Frame = -3
Query:  306 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALFL 692
            RGTFIEFRSGMLN+SPIGRNCSQEERDEFE+YDK+HNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLD FNEIHFFGDKTYKGGNDHEI+ESERTVGHTVTSP+DT+++CK+LFL
Sbjct:  117 RGTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDGFNEIHFFGDKTYKGGNDHEIYESERTVGHTVTSPDDTVKQCKSLFL 245          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM_ORYSJ (Phosphomannomutase OS=Oryza sativa subsp. japonica GN=PMM PE=2 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 7.329e-68
Identity = 115/131 (87.79%), Postives = 129/131 (98.47%), Query Frame = -3
Query:  300 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALFLAK 692
            RGTFIEFRSGMLN+SPIGRNCSQEERDEFE+YDK+HNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL++F EIHFFGDKTYKGGND+EIFES+RT+GHTVTSP+DT E+C++LF++K
Sbjct:  118 RGTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEEFQEIHFFGDKTYKGGNDYEIFESDRTIGHTVTSPDDTAEQCRSLFMSK 248          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM_ORYSI (Phosphomannomutase OS=Oryza sativa subsp. indica GN=PMM PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.329e-68
Identity = 115/131 (87.79%), Postives = 129/131 (98.47%), Query Frame = -3
Query:  300 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALFLAK 692
            RGTFIEFRSGMLN+SPIGRNCSQEERDEFE+YDK+HNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL++F EIHFFGDKTYKGGND+EIFES+RT+GHTVTSP+DT E+C++LF++K
Sbjct:  118 RGTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEEFQEIHFFGDKTYKGGNDYEIFESDRTIGHTVTSPDDTAEQCRSLFMSK 248          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM_WHEAT (Phosphomannomutase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.633e-67
Identity = 113/131 (86.26%), Postives = 129/131 (98.47%), Query Frame = -3
Query:  300 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALFLAK 692
            RGTFIEFRSGM+N+SPIGRNCSQEERD+FE+YDK+HN+RPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL++F EIHFFGDKTYKGGNDHEIFES+RTVGHTVTSP DT+++CK++FL++
Sbjct:  119 RGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEEFKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSPNDTVQQCKSIFLSE 249          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM_TOBAC (Phosphomannomutase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.528e-65
Identity = 114/131 (87.02%), Postives = 124/131 (94.66%), Query Frame = -3
Query:  300 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALFLAK 692
            RGTFIEFRSGMLN+SPIGR+CSQEERDEFE+YDK+H IR  MVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL++FNEIHFFGDKTYKGGNDHEI+ESERTVGHTVTSPEDT+++C   FL K
Sbjct:  117 RGTFIEFRSGMLNVSPIGRDCSQEERDEFEKYDKVHKIRQTMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEEFNEIHFFGDKTYKGGNDHEIYESERTVGHTVTSPEDTVKQCSEQFLGK 247          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM_SOLLC (Phosphomannomutase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.404e-65
Identity = 113/131 (86.26%), Postives = 123/131 (93.89%), Query Frame = -3
Query:  300 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALFLAK 692
            RGTFIEFRSGMLN+SPIGRNCSQEERDEFE+YDK+  IR  MVSVLREKFAH NLTFSIGGQISFDVFPQGWDKTYCLRYL++FNEIHFFGDKTYKGGNDHEI+ESERTVGHTVTSPE+T+++C  LFL K
Sbjct:  117 RGTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKVQKIRETMVSVLREKFAHFNLTFSIGGQISFDVFPQGWDKTYCLRYLEEFNEIHFFGDKTYKGGNDHEIYESERTVGHTVTSPEETLKQCSVLFLGK 247          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM_ARATH (Phosphomannomutase OS=Arabidopsis thaliana GN=PMM PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.440e-63
Identity = 107/130 (82.31%), Postives = 126/130 (96.92%), Query Frame = -3
Query:  303 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALFLA 692
            RGTFIEFR+GMLN+SPIGRNCSQEERDEFERYDK+ NIRPKMV+ LRE+FAHLNLTFSIGGQISFDVFP+GWDKTYCL+YL+DF+EIHFFGDKTY+GGND+EI+ES +T+GH+VTSP+DT+ KCKALF++
Sbjct:  117 RGTFIEFRNGMLNVSPIGRNCSQEERDEFERYDKVQNIRPKMVAELRERFAHLNLTFSIGGQISFDVFPKGWDKTYCLQYLEDFSEIHFFGDKTYEGGNDYEIYESPKTIGHSVTSPDDTVAKCKALFMS 246          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM_SCHPO (Phosphomannomutase OS=Schizosaccharomyces pombe GN=pmm1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.877e-47
Identity = 88/130 (67.69%), Postives = 107/130 (82.31%), Query Frame = -3
Query:  309 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALF 692
            RGTFIEFR+GM+NISP+GRN + EER+EFER+DK   IR  MV VLREKF    LTFSIGGQISFDVFP GWDKTYCL+++  + F+ IHFFGDKTYKGGND+EIF   RT+GH+VT+P+DT+ + K +F
Sbjct:  126 RGTFIEFRNGMINISPVGRNANTEERNEFERFDKGRKIRATMVDVLREKFKDYGLTFSIGGQISFDVFPAGWDKTYCLQHVEKEGFDTIHFFGDKTYKGGNDYEIFVDPRTIGHSVTNPDDTIAELKKIF 255          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM_YEAST (Phosphomannomutase OS=Saccharomyces cerevisiae GN=SEC53 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.075e-46
Identity = 87/130 (66.92%), Postives = 104/130 (80.00%), Query Frame = -3
Query:  309 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALF 692
            RGTF+EFR+GM+N+SPIGRN S EER+EFERYDK H IR K V  L+++F    LTFSIGGQISFDVFP GWDKTYCL+++  D F EIHFFGDKT  GGND+EIF  ERT+GH+V SP+DT++    LF
Sbjct:  123 RGTFLEFRNGMINVSPIGRNASTEERNEFERYDKEHQIRAKFVEALKKEFPDYGLTFSIGGQISFDVFPAGWDKTYCLQHVEKDGFKEIHFFGDKTMVGGNDYEIFVDERTIGHSVQSPDDTVKILTELF 252          
BLAST of CF832173 vs. ExPASy Swiss-Prot
Match: PMM2_MACFA (Phosphomannomutase 2 OS=Macaca fascicularis GN=PMM2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.111e-45
Identity = 88/130 (67.69%), Postives = 102/130 (78.46%), Query Frame = -3
Query:  309 RGTFIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALF 692
            RGTFIEFR+GMLN+SPIGR+CSQEER EF   DK  NIR K V+ LR++FA   LTFSIGGQISFDVFP GWDK YCLR++  D +  I+FFGDKT  GGNDHEIF   RTVG++VT+PEDT   C+ LF
Sbjct:  116 RGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPRTVGYSVTAPEDTRRICEELF 245          
The following BLAST results are available for this feature:
BLAST of CF832173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PMM_SOYBN3.886e-6992.25Phosphomannomutase OS=Glycine max PE=2 SV=1[more]
PMM_ORYSJ7.329e-6887.79Phosphomannomutase OS=Oryza sativa subsp. japonica... [more]
PMM_ORYSI7.329e-6887.79Phosphomannomutase OS=Oryza sativa subsp. indica G... [more]
PMM_WHEAT1.633e-6786.26Phosphomannomutase OS=Triticum aestivum PE=2 SV=1[more]
PMM_TOBAC1.528e-6587.02Phosphomannomutase OS=Nicotiana tabacum PE=2 SV=1[more]
PMM_SOLLC3.404e-6586.26Phosphomannomutase OS=Solanum lycopersicum PE=2 SV... [more]
PMM_ARATH2.440e-6382.31Phosphomannomutase OS=Arabidopsis thaliana GN=PMM ... [more]
PMM_SCHPO1.877e-4767.69Phosphomannomutase OS=Schizosaccharomyces pombe GN... [more]
PMM_YEAST2.075e-4666.92Phosphomannomutase OS=Saccharomyces cerevisiae GN=... [more]
PMM2_MACFA5.111e-4567.69Phosphomannomutase 2 OS=Macaca fascicularis GN=PMM... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01G23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832173 ID=CF832173; Name=CF832173; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTTAACGATATTTGTTTATTGGATTATGAAACGATATATTATAG
TGCTCATGTGCAGGTTTTTGCTGCCGCTACCGTGTTTTTAACGGAGATTT
TGCACTCCTACATCCAGCATGCAGGAACTTACCCCGCGATCAAACAACCG
CAACATATCCATACATCAAATACAACGAATCCAATTGGCAAATGCCTTTC
TCAATTGATCAAATAAAATTACATTGAATTGCTCGCATTAGAAATACGAA
TTATTCTCTCGTGTTTGTAGACTTACTATAACTTCTCCCAAATTCACGGT
TTAGCCAGGAAGAGAGCCTTACACTTTTCCATAGTATCCTCAGGGCTGGT
AACTGTGTGACCCACTGTTCGCTCGGATTCAAAAATTTCATGATCATTCC
CTCCCTTGTAAGTTTTGTCCCCAAAAAAGTGAATTTCATTGAAGTCATCA
AGGTATCTCAAGCAGTATGTCTTGTCCCATCCCTGGGGAAACACATCAAA
GCTTATCTGTCCTCCAATTGAAAATGTCAAGTTAAGGTGAGCAAACTTCT
CCCGAAGCACAGATACCATTTTTGGCCGTATATTGTGAATCTTGTCATAC
CTCTCAAACTCGTCCCTTTCTTCTTGGCTGCAGTTTCGCCCAATTGGTGA
AATATTAAGCATCCCACTTCGGAATTCAATGAAAGTTCCCCTTT
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