CF832176

Overview
NameCF832176
Unique NameCF832176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1007 contig Csv1_Contig1007:384..1218. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832176 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.165e-23
Identity = 59/115 (51.30%), Postives = 80/115 (69.57%), Query Frame = -3
Query:  486 VCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEAKASD 830
            V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST++ +ASP AQ +P+Q    C+  A+LP+ARRHSLQRF EKRRDRLV+KNPYP  S+ K +D
Sbjct:   66 VTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYPT-SDFKKTD 172          
The following BLAST results are available for this feature:
BLAST of CF832176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIF3B_ARATH1.165e-2351.30Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01H01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832176 ID=CF832176; Name=CF832176; organism=Citrus sinensis; type=EST; length=835bp
CTTTTTTTTTTTTTTTAGATACAATAGGTTTGTCATTTATTAGGCAGTTC
TGCTTTCAAGATATCAATACAACAATTAGACGCACAGTTTGAACAGACAT
TTCAATTGTCTTTGGATGTGAGAAGCAAAAATGTGAACTAATTCTCTATT
GCCAATTAAAAGATGCAATCACAGGGCGAAAGCACCTACATCAAGAAATT
TTTCTTTTCTTTTGGTCCCTGACAATGAGAAGTTGTACACACGCCATTCC
TACAAATTCCAAAAGCAATTCAAACATCATCACACCCTGTGCGCTTGGGT
TTTTCACACAAACAATACAGCAATGTCTAGTTTATCTAAGTAGATAGTTC
TGGATTATTTACTACAAACATCTAAGCAAGATAGATAATTTATGCAACAT
TGGCTGCAGCCTTAGGTTGCAATTCTTCCTGAGGCACGGAAGTTTTCTCA
AAGCAACCTGCCTCTGCAGGAGTCTGAGCTTTGGTGTCAGAAGCTTTTGC
CTCTGATTGAACAGGATATGGATTCTTGCTCACCAGCCTGTCACGTCGCT
TCTCGAAAAATCGCTGAAGGGAATGCCTCCTTGCCATTGGTAGTTCAGCT
TGCAATTTACAGAGGAGATTCCTTTGAACAGGATATGATTGTGCCCGAGG
TGATGCCAAAGCACTTGCAGTGCTTTGCAGTGAAGGAGACCTTGTTAGAA
CTGGTGAAGAGGCAGGACAGTTGGTATTGTCCGTCTTCATGTCACTTGTG
TTAGTAACAGTGGCAGAAGAGGCAGCAATAAGCATAATTTCACGAACCTT
GTCTGCCGGAATTGCATCAAATACACACACTTTTC
back to top