CF832177

Overview
NameCF832177
Unique NameCF832177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1007 contig Csv1_Contig1007:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832177 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.723e-31
Identity = 78/166 (46.99%), Postives = 105/166 (63.25%), Query Frame = 3
Query:  237 VAQNDAGSAAGLDFSGNEVFNNTIRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEAKASD 734
            VA  D G+A        E   N +R+T I T+      + P QLTIF+GG V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST++ +ASP AQ +P+Q    C+  A+LP+ARRHSLQRF EKRRDRLV+KNPYP  S+ K +D
Sbjct:   18 VADGDGGAAEIGGTGSVEKSINEVRSTEIQTA---EPTVPPNQLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYPT-SDFKKTD 172          
BLAST of CF832177 vs. ExPASy Swiss-Prot
Match: TIF3A_ARATH (Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 54/130 (41.54%), Postives = 72/130 (55.38%), Query Frame = 3
Query:  351 LAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPY-PVQSEAKASDT 737
            + P+QLTI +GG   VFD IPA+KV+EI+ IAA++          T+  N  + +P L R+ S  S AS +A              C   A++P+ARR SLQRFFEKRR R V   PY    SEA  ++T
Sbjct:  127 ILPSQLTIIFGGSFSVFDGIPAEKVQEILHIAAAAKA--------TETINLTSINPALKRAISF-SNASTVA--------------CVSTADVPIARRRSLQRFFEKRRHRFVHTKPYSATTSEADKNET 233          
BLAST of CF832177 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 50/124 (40.32%), Postives = 68/124 (54.84%), Query Frame = 3
Query:  366 LTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPASSPVLTRSPSLQSTASALASPR--AQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEAKAS 731
            LTIFYGG+V VFD   A+K +E++ +A   +  + T      N N  A S        + S+ + + SP   A   P+Q N    L  ELP+ARR SL RF EKR+DR+ SK PY +   A+AS
Sbjct:  120 LTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYS-----QKEIASSPNPVCSPAKTAAQEPIQPNP-ASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEAS 237          
BLAST of CF832177 vs. ExPASy Swiss-Prot
Match: TI11A_ARATH (Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.471e-11
Identity = 47/123 (38.21%), Postives = 63/123 (51.22%), Query Frame = 3
Query:  360 TQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVT--NTSDMKTDNTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEA 722
            +QLTIF+GGKV V++  P DK +EIM +A  +  VT  N      D  N   SS VL   P L          + Q    ++N + +      +ARR SL RFF KR+DR V++ PY V   A
Sbjct:   97 SQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEINIQTPINDENNNNKSSMVL---PDLNEPTDNNHLTKEQQQQQEQNQIVE-----RIARRASLHRFFAKRKDRAVARAPYQVNQNA 211          
The following BLAST results are available for this feature:
BLAST of CF832177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TIF3B_ARATH3.723e-3146.99Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
TIF3A_ARATH4.884e-1541.54Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A ... [more]
TI10B_ARATH4.135e-1440.32Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11A_ARATH1.471e-1138.21Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01H01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832177 ID=CF832177; Name=CF832177; organism=Citrus sinensis; type=EST; length=752bp
CACGACTCCACGCTCTCAACAACCACCACAAAAAGGCAAAATCAAAATTA
AAACCAAAGCAAAGGCGAGGAAGCTGCGAGAGAAAATTAGAAAAATTGAA
AAAAAATTAGGAGAAGAAGAGGAAGGAGCCTGGAAATTTCTCGAGTTTAA
TTCAAATGGAGGAATTTGGGACTGTTGATGAAGTGAAGCCGAAGGCTGAG
GCCGGAATGGAAGTAGACGATAAGAAGAAGCATGAGGTTGCGCAAAACGA
CGCCGGATCTGCTGCAGGGCTTGATTTTTCGGGGAACGAGGTGTTTAACA
ACACCATCAGGGCCACGGCAATCCCAACTTCTGGAGTGAATGCCACGGAC
CTTGCTCCAACTCAGCTTACGATCTTCTATGGTGGAAAAGTGTGTGTATT
TGATGCAATTCCGGCAGACAAGGTTCGTGAAATTATGCTTATTGCTGCCT
CTTCTGCCACTGTTACTAACACAAGTGACATGAAGACGGACAATACCAAC
TGTCCTGCCTCTTCACCAGTTCTAACAAGGTCTCCTTCACTGCAAAGCAC
TGCAAGTGCTTTGGCATCACCTCGGGCACAATCATATCCTGTTCAAAGGA
ATCTCCTCTGTAAATTGCAAGCTGAACTACCAATGGCAAGGAGGCATTCC
CTTCAGCGATTTTTCGAGAAGCGACGTGACAGGCTGGTGAGCAAGAATCC
ATATCCTGTTCAATCAGAGGCAAAAGCTTCTGACACCAAAGCTCAGACTC
CT
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