CF832178

Overview
NameCF832178
Unique NameCF832178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1007 contig Csv1_Contig1007:492..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832178 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = -3
Query:  327 PASSPVLTRYPSMQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEAK 548
            P SSP L R PS  ST++ +ASP AQ +P+Q    C+  A+LP+ARRHSLQRF EKRRDRLV+KNPYP     K
Sbjct:   98 PVSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYPTSDFKK 170          
The following BLAST results are available for this feature:
BLAST of CF832178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIF3B_ARATH2.241e-1759.46Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01H02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832178 ID=CF832178; Name=CF832178; organism=Citrus sinensis; type=EST; length=559bp
ACAGAGGCGAATGCACCTACATCAATCAAATTTTACTTTTCTTTTGGTCC
CTGACAATGAGAAGTAGTACACACGCCATTCCTACAAATTCCAATGGCAA
TTCAAACATCATCACACCCTGTGCGCTTGGGTTTTTCACACTAACAATAC
CGCAATGTCTAGTTTATCTAAGTAGATAGTTCTGGATTATTTACTACAAA
CATCTAAACCAGATAGATAATTTATGCAACATTGGCTGCAGCCTTAGGTT
GCAATTCTTCCTGAGGCACGGAAGTTTTCTCAAAGCGACCTGCCTCTGCA
GGAGTCTGAGCTTTGGTGTCAAAAGCTTTTGCCTCTGATTGAACAGGATA
TGGATTCTTGCTCACCAGCCTGTCACGTCGCTTCTCGAAAAATCGCTGAA
GGGAATGCCTCCTTGCCATTGGTAGTTCAGCTTGCAATTTACAGAGGAGA
TTCCTTTGAACCGGATATGATTGTGCCCGAGGTGATGCCAAAGCACTTGC
AGTGCTTTGCATTGAAGGATACCTTGTTAGAACTGGTGAAGAGGCAGGAC
AGTTGGTAT
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