CF832180

Overview
NameCF832180
Unique NameCF832180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length290
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13335 contig Csv1_Contig13335:1130..1418. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832180 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.173e-19
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = -3
Query:  154 TSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 288
            TSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL
Sbjct:  540 TSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of CF832180 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.173e-19
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = -3
Query:  154 TSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 288
            TSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL
Sbjct:  540 TSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of CF832180 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.615e-16
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = -3
Query:  154 TSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 288
            TSGRVKWKG +VITS+TEAQA+TPG FIAG SWL STGFPFSLGL
Sbjct:  539 TSGRVKWKGHKVITSSTEAQAYTPGRFIAGGSWLSSTGFPFSLGL 583          
BLAST of CF832180 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.907e-15
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = -3
Query:  154 TSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 288
            TSGRV WKGF+VITS+TEAQ FTPGSFIAG SWL +T FPFSLGL
Sbjct:  275 TSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL 319          
BLAST of CF832180 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.389e-12
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = -3
Query:  154 TSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 288
            T+ RVKW+GF+VIT+A EAQ +T G FI G  WL STGFPFSLGL
Sbjct:  548 TANRVKWRGFKVITAAAEAQKYTAGQFIGGGGWLSSTGFPFSLGL 592          
BLAST of CF832180 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.815e-12
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = -3
Query:  154 TSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 288
            T+ RVKWKG++VITS TEAQ FT G FI G  WL STGFPFSL L
Sbjct:  543 TANRVKWKGYKVITSDTEAQPFTAGQFIGGGGWLASTGFPFSLSL 587          
The following BLAST results are available for this feature:
BLAST of CF832180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PME3_CITSI1.173e-19100.00Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI1.173e-19100.00Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PMEU1_SOLLC4.615e-1684.44Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME_DAUCA3.907e-1582.22Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME3_ARATH1.389e-1268.89Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME2_ARATH1.815e-1271.11Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01H04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832180 ID=CF832180; Name=CF832180; organism=Citrus sinensis; type=EST; length=290bp
TTTTTTTTTTTTTTTCTTGTAATCACACAATAGTATTTGTGAAATCGATG
CCACGAATAAGACACGCTCAATCAAATATTACAAATTGAAAGACCAGAGA
CCTATGGATCCACTAATACAAAACATATTAATTAAAACTCCTAGTGAATA
TTACAAACCAAGGGAGAATGGGAAACCAGTGGAGCCCAACCAGCTACTAC
CAGCAATGAAGCTTCCAGGAGTAAAAGCTTGTGCCTCGGTAGCACTTGTA
ATAACCCTAAATCCCTTCCATTTCACTCTCCCTGAAGTTC
back to top