CF832181

Overview
NameCF832181
Unique NameCF832181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length293
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13335 contig Csv1_Contig13335:1129..1421. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832181 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.995e-19
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GTSGIVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 138
            GTSG VKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL
Sbjct:  539 GTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of CF832181 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.995e-19
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GTSGIVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 138
            GTSG VKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL
Sbjct:  539 GTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of CF832181 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.893e-15
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    4 TSGIVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 138
            TSG VKWKG +VITS+TEAQA+TPG FIAG SWL STGFPFSLGL
Sbjct:  539 TSGRVKWKGHKVITSSTEAQAYTPGRFIAGGSWLSSTGFPFSLGL 583          
BLAST of CF832181 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.296e-14
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1
Query:    4 TSGIVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 138
            TSG V WKGF+VITS+TEAQ FTPGSFIAG SWL +T FPFSLGL
Sbjct:  275 TSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL 319          
BLAST of CF832181 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.362e-12
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 GTSGIVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 138
            GT+  VKW+GF+VIT+A EAQ +T G FI G  WL STGFPFSLGL
Sbjct:  547 GTANRVKWRGFKVITAAAEAQKYTAGQFIGGGGWLSSTGFPFSLGL 592          
BLAST of CF832181 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.085e-12
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    1 GTSGIVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 138
            GT+  VKWKG++VITS TEAQ FT G FI G  WL STGFPFSL L
Sbjct:  542 GTANRVKWKGYKVITSDTEAQPFTAGQFIGGGGWLASTGFPFSLSL 587          
The following BLAST results are available for this feature:
BLAST of CF832181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PME3_CITSI1.995e-1997.83Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI1.995e-1997.83Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PMEU1_SOLLC3.893e-1582.22Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME_DAUCA3.296e-1480.00Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME3_ARATH2.362e-1267.39Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME2_ARATH3.085e-1269.57Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01H04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832181 ID=CF832181; Name=CF832181; organism=Citrus sinensis; type=EST; length=293bp
GGAACTTCAGGCATTGTGAAATGGAAGGGATTTAGGGTTATTACAAGTGC
TACCGAGGCTCAAGCTTTTACTCCTGGAAGCTTCATTGCTGGTAGTAGCT
GGCTGGGCTCCACTGGTTTCCCATTCTCCCTTGGTTTGTAATATTCACTA
GGAGTTTTAATTAATATGTTTTGTATTAGTGGATCCATAGGTCTCTGGTC
TTTCAATTTGTAATATTTGATTGAGCGTGTCTTATTCGTGGCTTCGATTT
CACAAATACTATTGTGTGATTAACAAGAAAAAAAAAAAAAAAA
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