CF832184

Overview
NameCF832184
Unique NameCF832184
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832184 vs. ExPASy Swiss-Prot
Match: SETD3_MOUSE (SET domain-containing protein 3 OS=Mus musculus GN=Setd3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.198e-15
Identity = 75/263 (28.52%), Postives = 121/263 (46.01%), Query Frame = 3
Query:   84 PDLVKWVKKEGGFVHQAVKIFPQEDNETYGLGLVASQDIPKGSLLIALPDHIPLKFESDAGDGADSVLVDLASQ--VPEELWAMKLGLKLLQERARLGSFWWPYISNLPETYSVPIFFQGEDIKNLQYAPLLYQV-----NKRCRFLLDFDQEVRRALANVKPNDHPFGGQELNASSLGWAMSAVSSRAFRLHGKKLAAGTRNEVPVMLPLIDMCNHSFNPNAQIIQEEDDLQLLIKVVAETEIKQNDSLLPNYGCLSNDFFL 851
            PDL+KW  + G     +V+ F   + +  G GL A++DI    L + +P  + +  ES      +SVL  L SQ  + + +  + L   LL ERA   SFW PYI  LP  Y  P++F+ E+++ LQ    ++ V     N   ++   +        AN  P    F  ++       WA+S+V +R  ++  +    G+R  +  ++PL DMCNH+          EDD     + VA  + +  D +   YG  SN  F+
Sbjct:   80 PDLMKWASENGA----SVEGFEMVNFKEEGFGLRATRDIKAEELFLWVPRKLLMTVES----AKNSVLGPLYSQDRILQAMGNIALAFHLLCERASPNSFWQPYIQTLPSEYDTPLYFEEEEVRCLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLPLKESFTYEDYR-----WAVSSVMTRQNQIPTED---GSRVTL-ALIPLWDMCNHTNGLITTGYNLEDD---RCECVALQDFQAGDQIYIFYGTRSNAEFV 322          
BLAST of CF832184 vs. ExPASy Swiss-Prot
Match: SETD3_HUMAN (SET domain-containing protein 3 OS=Homo sapiens GN=SETD3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.947e-15
Identity = 73/263 (27.76%), Postives = 121/263 (46.01%), Query Frame = 3
Query:   84 PDLVKWVKKEGGFVHQAVKIFPQEDNETYGLGLVASQDIPKGSLLIALPDHIPLKFESDAGDGADSVLVDLASQ--VPEELWAMKLGLKLLQERARLGSFWWPYISNLPETYSVPIFFQGEDIKNLQYAPLLYQV-----NKRCRFLLDFDQEVRRALANVKPNDHPFGGQELNASSLGWAMSAVSSRAFRLHGKKLAAGTRNEVPVMLPLIDMCNHSFNPNAQIIQEEDDLQLLIKVVAETEIKQNDSLLPNYGCLSNDFFL 851
            PDL+KW  + G     +V+ F   + +  G GL A++DI    L + +P  + +  ES      +SVL  L SQ  + + +  + L   LL ERA   SFW PYI  LP  Y  P++F+ ++++ LQ    ++ V     N   ++   +        AN  P    F  ++       WA+S+V +R  ++  +    G+R  +  ++PL DMCNH+          EDD     + VA  + +  + +   YG  SN  F+
Sbjct:   80 PDLMKWASENGA----SVEGFEMVNFKEEGFGLRATRDIKAEELFLWVPRKLLMTVES----AKNSVLGPLYSQDRILQAMGNIALAFHLLCERASPNSFWQPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLPLKDSFTYEDYR-----WAVSSVMTRQNQIPTED---GSRVTL-ALIPLWDMCNHTNGLITTGYNLEDD---RCECVALQDFRAGEQIYIFYGTRSNAEFV 322          
BLAST of CF832184 vs. ExPASy Swiss-Prot
Match: SETD3_CHICK (SET domain-containing protein 3 OS=Gallus gallus GN=SETD3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 70/263 (26.62%), Postives = 119/263 (45.25%), Query Frame = 3
Query:   84 PDLVKWVKKEGGFVHQAVKIFPQEDNETYGLGLVASQDIPKGSLLIALPDHIPLKFESDAGDGADSVLVDLASQ--VPEELWAMKLGLKLLQERARLGSFWWPYISNLPETYSVPIFFQGEDIKNLQYAPLLYQV-----NKRCRFLLDFDQEVRRALANVKPNDHPFGGQELNASSLGWAMSAVSSRAFRLHGKKLAAGTRNEVPVMLPLIDMCNHSFNPNAQIIQEEDDLQLLIKVVAETEIKQNDSLLPNYGCLSNDFFL 851
            P+L+KW  + G     + + F   + E  G GL A+++I    L + +P  + +  ES      +SVL  L SQ  + + +  + L   LL ERA   SFW PYI  LP  Y  P++F+ ++++ L+    ++ V     N   ++   +        A+  P    F   +       WA+S+V +R  ++  +    G+R  +  ++PL DMCNH+          EDD     + VA  + K  + +   YG  SN  F+
Sbjct:   80 PELIKWATENGA----STEGFEIANFEEEGFGLKATREIKAEELFLWVPRKLLMTVES----AKNSVLGSLYSQDRILQAMGNITLAFHLLCERANPNSFWLPYIQTLPSEYDTPLYFEEDEVQYLRSTQAIHDVFSQYKNTARQYAYFYKVIQTHPNASKLPLKDSFTYDDYR-----WAVSSVMTRQNQIPTED---GSRVTL-ALIPLWDMCNHTNGLITTGYNLEDD---RCECVALQDFKAGEQIYIFYGTRSNAEFV 322          
The following BLAST results are available for this feature:
BLAST of CF832184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SETD3_MOUSE1.198e-1528.52SET domain-containing protein 3 OS=Mus musculus GN... [more]
SETD3_HUMAN5.947e-1527.76SET domain-containing protein 3 OS=Homo sapiens GN... [more]
SETD3_CHICK3.263e-1326.62SET domain-containing protein 3 OS=Gallus gallus G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01H06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832184 ID=CF832184; Name=CF832184; organism=Citrus sinensis; type=EST; length=852bp
CAAAGATTGTACTATTGTCCCTAATCCACATCCGCCCGATAACGTGCGCT
GCTTCTTACCATACACGGCTGGTACCTCACCCACCGGACTTGGTCAAGTG
GGTCAAGAAAGAAGGCGGGTTCGTGCACCAAGCAGTCAAGATATTTCCTC
AAGAAGATAATGAAACTTACGGTCTTGGATTGGTCGCCTCACAAGATATT
CCAAAAGGGTCACTTCTCATTGCTCTTCCTGATCATATACCGTTGAAGTT
TGAATCCGACGCTGGAGATGGGGCTGATTCTGTCTTAGTTGATTTGGCTT
CCCAAGTTCCTGAGGAACTATGGGCGATGAAATTGGGTTTGAAGCTGCTG
CAAGAAAGAGCGAGGTTGGGAAGCTTCTGGTGGCCGTATATTAGCAATCT
TCCTGAAACTTACAGTGTGCCAATCTTCTTTCAAGGGGAGGATATTAAGA
ACTTGCAATATGCGCCACTTCTCTACCAGGTAAACAAACGTTGCCGTTTT
CTTCTTGATTTTGATCAAGAGGTCAGACGTGCTCTTGCAAATGTGAAACC
AAATGATCACCCTTTTGGAGGCCAGGAATTAAATGCATCATCTCTTGGAT
GGGCAATGTCAGCTGTCTCATCTCGGGCATTTCGTTTGCATGGGAAAAAG
CTAGCAGCTGGGACACGCAATGAGGTCCCTGTGATGCTTCCTCTCATTGA
TATGTGCAACCATAGCTTCAATCCGAATGCCCAAATTATCCAGGAAGAAG
ATGATTTGCAACTTCTGATAAAGGTTGTTGCAGAGACAGAGATTAAACAA
AATGATTCTTTACTTCCTAATTATGGGTGCCTAAGCAATGATTTCTTCTT
AC
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