CF832192

Overview
NameCF832192
Unique NameCF832192
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832192 vs. ExPASy Swiss-Prot
Match: CSN8_ARATH (COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8 PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.598e-80
Identity = 141/197 (71.57%), Postives = 168/197 (85.28%), Query Frame = -1
Query:  155 MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPSKLQRLTEYVFHLEH 745
            MD SP+ +ALA+KS++KIADICD LML+VA+EGI + D+WPY IHLLGY+YV+D +SARFLWK IP+ IK+ + EVVAAW IGQ LWT DYAGVY+AIRG+DWSQEA+ +VAAFS+LYTKRMFQLLLSAYSTI+  D ALFLGM EDDA  YV + GWT+D AS+M +VKKQ +  EQK+D SKLQRLTEYVFHLEH
Sbjct:    1 MDLSPVKEALAAKSFDKIADICDTLMLQVASEGIEYHDDWPYAIHLLGYFYVDDCDSARFLWKRIPTAIKERKPEVVAAWGIGQKLWTHDYAGVYEAIRGYDWSQEAKDMVAAFSDLYTKRMFQLLLSAYSTITIHDLALFLGMTEDDATTYVVENGWTVDAASQMASVKKQAVKREQKVDSSKLQRLTEYVFHLEH 197          
BLAST of CF832192 vs. ExPASy Swiss-Prot
Match: CSN8_XENLA (COP9 signalosome complex subunit 8 OS=Xenopus laevis GN=csn8 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 8.411e-29
Identity = 74/199 (37.19%), Postives = 115/199 (57.79%), Query Frame = -1
Query:  155 MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPS--KLQRLTEYVFHLEH 745
            M  S    A  S S++K+ + C++  L+ A  GIA    +  ++ L  Y   ND+N+AR+LWK IPS IK S +E+   W++GQ +W RD+ G+Y +I  + WS+  Q ++ A  +   +R F L+  AY++IS  D A F+G+  ++A   V +QGW  D A+ M+  KK P      L P+  +L RLT+YV  LE+
Sbjct:    1 MKLSESVMAQNSVSFQKLQEQCEEQELE-APGGIASPQVYNQLLAL--YLLHNDLNNARYLWKRIPSAIKSSHSELGGIWEVGQKIWQRDFPGIYTSISAYQWSENIQQIMEAVRDATQQRAFGLVSQAYTSISADDFAAFVGLPVEEAVKGVLEQGWQADSATGMVMPKK-PDSAPLSLIPNEQQLARLTDYVAFLEN 195          
BLAST of CF832192 vs. ExPASy Swiss-Prot
Match: CSN8_XENTR (COP9 signalosome complex subunit 8 OS=Xenopus tropicalis GN=csn8 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.615e-27
Identity = 68/186 (36.56%), Postives = 111/186 (59.68%), Query Frame = -1
Query:  155 SYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPS--KLQRLTEYVFHLEH 706
            S++++ + C++  L+ A  GIA    +  ++ L  Y   ND+N+AR+LWK IP  IK + +E+   W++GQ +W RD+ G+Y +I    WS+  Q ++ A  +   +R F L+  AY++IS  D A F+G++ ++A   V +QGW  D A+RM+  KK P      L P+  +L RLT+YV  LE+
Sbjct:   12 SFQRLQEQCEEQELE-APGGIANPQVYSQLLAL--YLLHNDMNNARYLWKRIPPAIKSAHSELGGIWEVGQKIWQRDFPGIYTSISACQWSEAIQPVMEAVRDATRRRAFGLVSQAYTSISADDFAAFVGLSVEEAVKGVIEQGWQADLATRMVMPKK-PDSAPLSLIPNEQQLARLTDYVAFLEN 193          
BLAST of CF832192 vs. ExPASy Swiss-Prot
Match: CSN8_DANRE (COP9 signalosome complex subunit 8 OS=Danio rerio GN=cops8 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.665e-26
Identity = 58/153 (37.91%), Postives = 89/153 (58.17%), Query Frame = -1
Query:  155 LLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKK-QPLVTEQKLDPSKLQRLTEYVFHLEH 610
            L+ Y   ND+N+AR+LWK IP  IK +  E+ A W +GQ +W RD+ G+Y AI  + WS+    ++ A  E   +R + L+  AY++IS +D A F+G + ++A   V   GW  DP +RM+  +K  P       +  +L RLT+YV  LE+
Sbjct:   39 LVLYLLHNDMNNARYLWKRIPQAIKTANPEMAAIWAVGQRIWQRDFPGIYSAIAAYQWSESILPVMEALRESTRRRAYGLVAQAYTSISAEDFAAFVGYSVEEAVKGVVSHGWQADPNTRMIMPQKPDPPPVSLVPNEQQLARLTDYVAFLEN 191          
BLAST of CF832192 vs. ExPASy Swiss-Prot
Match: CSN8_RAT (COP9 signalosome complex subunit 8 OS=Rattus norvegicus GN=Cops8 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.939e-25
Identity = 67/201 (33.33%), Postives = 105/201 (52.24%), Query Frame = -1
Query:  155 SYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----SKLQRLTEYVFHLEH 706
            S+ K+ D C++  L+ A  GIA    +  ++ L  Y   ND+N+AR+LWK IP  IK + +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A  +   +R F L+  AY++I   D A F+G+  ++A   V +QGW  D  +RM+  +K              PL     + P     +L RLT+YV  LE+
Sbjct:   12 SFRKLLDQCENQELE-APGGIATPPVYGQLLAL--YLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPAPGALDVSLNRFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209          
BLAST of CF832192 vs. ExPASy Swiss-Prot
Match: CSN8_MOUSE (COP9 signalosome complex subunit 8 OS=Mus musculus GN=Cops8 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.939e-25
Identity = 67/201 (33.33%), Postives = 105/201 (52.24%), Query Frame = -1
Query:  155 SYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----SKLQRLTEYVFHLEH 706
            S+ K+ D C++  L+ A  GIA    +  ++ L  Y   ND+N+AR+LWK IP  IK + +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A  +   +R F L+  AY++I   D A F+G+  ++A   V +QGW  D  +RM+  +K              PL     + P     +L RLT+YV  LE+
Sbjct:   12 SFRKLLDQCENQELE-APGGIATPPVYGQLLAL--YLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPASGTLDVSLNRFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209          
BLAST of CF832192 vs. ExPASy Swiss-Prot
Match: CSN8_PONAB (COP9 signalosome complex subunit 8 OS=Pongo abelii GN=COPS8 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.533e-25
Identity = 66/201 (32.84%), Postives = 106/201 (52.74%), Query Frame = -1
Query:  155 SYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----SKLQRLTEYVFHLEH 706
            S++K+ D C++  L+ A  GIA    +  ++ L  Y   ND+N+AR+LWK IP  IK + +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A  +   +R F L+  AY++I   D A F+G+  ++A   + +QGW  D  +RM+  +K              PL     + P     +L RLT+YV  LE+
Sbjct:   12 SFKKLLDQCENQELE-APGGIATPPVYGQLLAL--YLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIVADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209          
BLAST of CF832192 vs. ExPASy Swiss-Prot
Match: CSN8_HUMAN (COP9 signalosome complex subunit 8 OS=Homo sapiens GN=COPS8 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.533e-25
Identity = 66/201 (32.84%), Postives = 106/201 (52.74%), Query Frame = -1
Query:  155 SYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----SKLQRLTEYVFHLEH 706
            S++K+ D C++  L+ A  GIA    +  ++ L  Y   ND+N+AR+LWK IP  IK + +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A  +   +R F L+  AY++I   D A F+G+  ++A   + +QGW  D  +RM+  +K              PL     + P     +L RLT+YV  LE+
Sbjct:   12 SFKKLLDQCENQELE-APGGIATPPVYGQLLAL--YLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209          
BLAST of CF832192 vs. ExPASy Swiss-Prot
Match: CSN8_DICDI (COP9 signalosome complex subunit 8 OS=Dictyostelium discoideum GN=csn8 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.304e-13
Identity = 50/199 (25.13%), Postives = 101/199 (50.75%), Query Frame = -1
Query:  158 MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPS---KLQRLTEYVFHLE 745
            M F+ + + ++SK+++ I D C     ++ ++ I     + Y ++LL Y   ND+ +A+ LWK IP+  K S  ++   + I + +   +    Y ++   +   +    +    E + +R F+L+ +AYS+I+  D + +LG++ +D   +   + W  D AS   T+K  P+  +    P+   +++ LT YV  LE
Sbjct:    1 MAFTEIANLISSKNFKAILDYCQ--RQEIESKNIDLIKSY-YGVYLLSYLINNDLINAKHLWKRIPNDFKQSNQQLKNIYTIIKSISQTNPTITYTSL-SINIGDDYTPFITTLKENFQQRTFELISNAYSSITVNDCSSYLGISPEDTIKFTTSKCWEHDKASN--TLKPVPIQKQSSELPTGNQQIRSLTSYVLFLE 193          
The following BLAST results are available for this feature:
BLAST of CF832192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CSN8_ARATH3.598e-8071.57COP9 signalosome complex subunit 8 OS=Arabidopsis ... [more]
CSN8_XENLA8.411e-2937.19COP9 signalosome complex subunit 8 OS=Xenopus laev... [more]
CSN8_XENTR4.615e-2736.56COP9 signalosome complex subunit 8 OS=Xenopus trop... [more]
CSN8_DANRE6.665e-2637.91COP9 signalosome complex subunit 8 OS=Danio rerio ... [more]
CSN8_RAT1.939e-2533.33COP9 signalosome complex subunit 8 OS=Rattus norve... [more]
CSN8_MOUSE1.939e-2533.33COP9 signalosome complex subunit 8 OS=Mus musculus... [more]
CSN8_PONAB2.533e-2532.84COP9 signalosome complex subunit 8 OS=Pongo abelii... [more]
CSN8_HUMAN2.533e-2532.84COP9 signalosome complex subunit 8 OS=Homo sapiens... [more]
CSN8_DICDI1.304e-1325.13COP9 signalosome complex subunit 8 OS=Dictyosteliu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01H12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832192 ID=CF832192; Name=CF832192; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTTAGAATAAATCATACAATTGCTATTTCAACATTTG
CCGAAAGATCCGAGTTCTAAATGCTTTGAAAGCATTTCTGTCCAGAATCA
AAAGTTGATTTCACAAGAGAATTGACAGTTTCGGCTGTTCAAGAAGTTAA
ATTAATGTTCAAGGTGGAACACGTATTCTGTCAAGCGCTGCAGTTTGCTG
GGATCTAGTTTCTGCTCTGTCACAAGAGGCTGCTTCTTCACGGTCAACAT
TCGAGAAGCAGGATCCAAAGTCCAACCTTGCTGTTGTACATAATATGCGG
CATCATCCTCATTCATTCCCAGAAAGAGAGCTGTGTCTTGGGTGCTTATT
GTCGAATAAGCGGACAGAAGCAGCTGAAACATCCTCTTGGTGTAGAGCTC
TGAGAAAGCAGCAACAAGAGCTTGTGCTTCTTGACTCCAATCAAACCCAC
GAATGGCATCATAAACACCCGCATAATCCCGTGTCCAAAGATGCTGACCA
ATTTTCCAAGCTGCAACCACTTCTGCCCTGCTATCCTTAATCGTCGAAGG
TATTGATTTCCAAAGGAAGCGTGCACTGTTAATATCATTGACATAATAGT
AACCGAGGAGATGAATCACGTAAGGCCATTCGTCTTGAAACGCAATACCC
TCTGCAGCAACCTTGAGCATTAGGTCGTCGCAAATATCAGCGATTTTTTC
ATACGATTTGGACGCTAAAGCGTCTGTTAAAGGAGAGAAGTCCATCGCAC
TCCCTACTCTTCTTCCCTGCTCTTATTCTTACTGTGTAAA
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