CF832198

Overview
NameCF832198
Unique NameCF832198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 280.796 bits (717), Expect = 5.244e-75
Identity = 137/140 (97.86%), Postives = 140/140 (100.00%), Query Frame = -2 
Query:  313 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 732
            MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Sbjct:    1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
[Close]
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.849e-75
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = -2 
Query:  313 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 732
            MSKRGRGGSAGNKFRMSLGLPVAAT+NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAV+VRQRKPWRRKDGVFMYFEDNAGVIVN KGEMKGSAITGPIGKECADLWPRIASAANAIV
Sbjct:    1 MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
[Close]
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.579e-69
Identity = 128/140 (91.43%), Postives = 133/140 (95.00%), Query Frame = -2 
Query:  313 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 732
            MSKRGRGGS+GNKFRMSLGLPV A VNCADNTGAKNLY+IS  G++GRLNRLP+A VGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEM  SAITGPIGKECADLWPRIASAANAIV
Sbjct:    1 MSKRGRGGSSGNKFRMSLGLPVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGPIGKECADLWPRIASAANAIV 139
[Close]
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 119/139 (85.61%), Postives = 129/139 (92.81%), Query Frame = -2 
Query:  316 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 732
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLPSA VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = -2 
Query:  316 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 732
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = -2 
Query:  316 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 732
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = -2 
Query:  316 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 732
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = -2 
Query:  316 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 732
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = -2 
Query:  316 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 732
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of CF832198 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = -2 
Query:  316 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 732
            MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
The following BLAST results are available for this feature:
BLAST of CF832198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
RL23_ARATH5.244e-7597.8660S ribosomal protein L23 OS=Arabidopsis thaliana ... [more]
RL23_TOBAC6.849e-7597.8660S ribosomal protein L23 OS=Nicotiana tabacum GN=... [more]
RL23_TORRU9.579e-6991.4360S ribosomal protein L23 OS=Tortula ruralis GN=RP... [more]
RL23_DANRE7.104e-6485.6160S ribosomal protein L23 OS=Danio rerio GN=rpl23 ... [more]
RL23_RAT1.583e-6384.8960S ribosomal protein L23 OS=Rattus norvegicus GN=... [more]
RL23_PIG1.583e-6384.8960S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P... [more]
RL23_MOUSE1.583e-6384.8960S ribosomal protein L23 OS=Mus musculus GN=Rpl23... [more]
RL23_ICTPU1.583e-6384.8960S ribosomal protein L23 OS=Ictalurus punctatus G... [more]
RL23_HUMAN1.583e-6384.8960S ribosomal protein L23 OS=Homo sapiens GN=RPL23... [more]
RL23_BOVIN1.583e-6384.8960S ribosomal protein L23 OS=Bos taurus GN=RPL23 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832198 ID=CF832198; Name=CF832198; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTTAAAAAAAACCAACCAATTAGTAACCTTATTTAT
AAAAACAAAACTTTAAAACGTTTAAAACAAAATCAATATTTCCTCTTAAA
AGAACAAAATTCTTTGGAAATTAAACACAAATTAAATTCATTCTACAATT
AGAATAGGTAGAAAATCTGAAATCTCCTTGTATCTGTCTAGCAATAGCCA
ATAGAGGAACAACCACAACACTCATCAGTAGGAAATGATCCCAATGATAT
TAACAGACCCTACGGTCACCTACCAAACTAAGGCCAAAAAAATCCCTTAA
AACCCCCACTCAAACAATAGCATTGGCAGCACTTGCAATTCTTGGCCACA
GATCAGCACACTCCTTACCAATTGGTCCAGTTATGGCAGATCCTTTCATT
TCCCCCTTAGGGTTGACGATGACACCAGCATTATCTTCAAAGTACATGAA
GACGCCGTCCTTTCGGCGCCAGGGCTTGCGCTGGCGGACGATGACAGCTG
GCATGACCTTTTTCCTCAGATCGGGCTTTCCTTTCTTGACAGTGGCCATG
ACCATGTCGCCGACGCAGGCCGACGGAAGTCGGTTGAGTCTCCCTTTGAT
TCCTTTCACCGATATTATGTAGAGATTCTTCGCACCCGTGTTGTCGGCAC
AGTTCACCGTCGCCGCCACCGGCAGACCCAGCGACATCCTGAACTTGTTC
CCCGCCGACCCTCCCCTTCCTCGCTTCGACATT
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