CF832201

Overview
NameCF832201
Unique NameCF832201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832201 vs. ExPASy Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.955e-23
Identity = 47/83 (56.63%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  185 CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 433
            CPRDALKLGVCA+VLN + NV IG+PP  PCC+L++GL +LEAAVCLCTAIKA                   C K VP GF+C
Sbjct:   54 CPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136          

HSP 2 Score: 30.8018 bits (68), Expect = 1.955e-23
Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:   40 MGSKTSASLALFLAVNILLF 99
            MGSK SAS+ALF  +NIL F
Sbjct:    1 MGSKNSASVALFFTLNILFF 20          
BLAST of CF832201 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 2
Query:  182 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 433
            +CP DALKLG C +VL GL+++ IG    Q CC L+ GL DL+AA+CLCT I+                    C K  P+ F+C
Sbjct:  260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343          
BLAST of CF832201 vs. ExPASy Swiss-Prot
Match: CCDP_MAIZE (Cortical cell-delineating protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 38/83 (45.78%), Postives = 45/83 (54.22%), Query Frame = 2
Query:  185 CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 433
            CP DALKL VCA VL GL  V +G P  + CC L++GL DL+AA+CLCTAIKA                   C +  P  F C
Sbjct:   48 CPIDALKLKVCAKVL-GL--VKVGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTC 127          
The following BLAST results are available for this feature:
BLAST of CF832201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
14KD_DAUCA1.955e-2356.6314 kDa proline-rich protein DC2.15 OS=Daucus carot... [more]
PRF1_SOLLC5.158e-1341.6736.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
CCDP_MAIZE2.167e-1145.78Cortical cell-delineating protein OS=Zea mays PE=2... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01H17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832201 ID=CF832201; Name=CF832201; organism=Citrus sinensis; type=EST; length=692bp
ACGATCATAACGGAAAAGCTAGTGGCTAGGATTTAAGAGATGGGTTCAAA
AACCTCAGCTTCACTTGCTCTCTTTCTTGCAGTCAACATTCTGCTTTTTT
GCCCTAGTCACTGCCTGTGGCTCTTGCCCTTCTCCTAAACCAAAACCCAA
GCCAAAGCCAACTCCCAGCCCGTCAAGGGCTTCCTGCCCAAGAGATGCCC
TTAAACTAGGTGTATGCGCCAACGTGCTTAATGGGTTGCTTAATGTCACT
ATTGGCACACCCCCGGTACAACCATGCTGCACTCTTATTCAAGGCCTTGC
TGATCTTGAGGCAGCTGTTTGCCTTTGCACTGCCATCAAAGCGAACATTT
TGGGCATCAACCTTAATATCCCGCTTTCACTCAGCCTTCTTTTGAACGTC
TGTTCAAAGAGTGTGCCCCGTGGTTTCCAGTGTGCTTAATGATGATCATA
TATTTCTGTATCTTCGTCTTTAATTTAATTTACAGGTTCTGGGATTATGA
GTTCTGCACGGTAATGTGTGTTACTGGTAATTTCTGTTGTTTAATAATTT
TTCATACAGGTGGTTTGATTGCGAGATGACAGTGAATAAGTCTGATTTGT
TTACCTTGGTGGTGGTGTTTTCTTTATTATGTATTTTTCATTTAACAGAA
GATGAATTACTCGTTTGTCTCGAAGCAAAAAAAAAAAAAAAA
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