CF832202

Overview
NameCF832202
Unique NameCF832202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832202 vs. ExPASy Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.365e-26
Identity = 66/136 (48.53%), Postives = 78/136 (57.35%), Query Frame = -3
Query:  261 MGSKTSASLALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXS-----GASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXNVCSKSVPRGFQC 653
            MGSK SAS+ALF  +NILFFALV++                            CPRDALKLGVCA+VLN + NV IG+PP  PCC+L++GL +LEAAVCLCTAIKA                 N C K VP GF+C
Sbjct:    1 MGSKNSASVALFFTLNILFFALVSSTEKCPDPYKPKPKPTPKPTPTPYPSAGKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136          
BLAST of CF832202 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = -3
Query:  261 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXNVCSKSVPRGFQC 512
            +CP DALKLG C +VL GL+++ IG    Q CC L+ GL DL+AA+CLCT I+                  + C K  P+ F+C
Sbjct:  260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343          
BLAST of CF832202 vs. ExPASy Swiss-Prot
Match: CCDP_MAIZE (Cortical cell-delineating protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 50/126 (39.68%), Postives = 61/126 (48.41%), Query Frame = -3
Query:  261 LALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXSGAS---CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXNVCSKSVPRGFQC 629
            +ALFLA+++LF A    C                  S  S   CP DALKL VCA VL GL  V +G P  + CC L++GL DL+AA+CLCTAIKA                 N C +  P  F C
Sbjct:    5 VALFLALSLLFAATAHGCEPNCSGPVVPTPPVVPTPSSHSHGRCPIDALKLKVCAKVL-GL--VKVGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTC 127          
The following BLAST results are available for this feature:
BLAST of CF832202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
14KD_DAUCA2.365e-2648.5314 kDa proline-rich protein DC2.15 OS=Daucus carot... [more]
PRF1_SOLLC5.114e-1341.6736.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
CCDP_MAIZE6.679e-1339.68Cortical cell-delineating protein OS=Zea mays PE=2... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01H18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832202 ID=CF832202; Name=CF832202; organism=Citrus sinensis; type=EST; length=691bp
TTTTTTTTTTTTTTTGCTTCGAGACAACGAGTAATTCATCTTCTGCTTAT
ATATGAAAAATACATAATAAAGAAAACACCACCACCAAGGTAAACAAATC
AGACTTATTCACTGTCATCTCGCAATCAAACCACCTGTATGAAAAATTAT
TAAACAACAGAAATTACCAGTAACACACATTACCGTGCAGAACTCATAAT
CCCAGAACCTGTAAATTAAATTAAAGACGAAGATACAGAAATATATGATC
ATCATTAAGCACACTGGAAACCACGGGGCACACTCTTTGAACAGACGTTC
AAAAGAAGGCTGAGTGAAAGCGGGATATTAAGGTTGATGCCCAAAATGTT
CGCTTTGATGGCAGTGCAAAGGCAAACAGCTGCCTCAAGATCAGCAAGGC
CTTGAATAAGAGTGCAGCATGGTTGTACCGGGGGTGTGCCAATAGTGACA
TTAAGCAAACCATTAAGCACGTTGGCGCATACACCTAGTTTAAGGGCATC
TCTTGGGCAGGAAGCCCCTGACGGGCTGGGAGTTGGCTTTGGCTTGGGTT
TTGGTTTAGGAGAAGGGCAAGAGCCACAGGCAGTGACTAGGGCAAAAAAG
AGAATGTTGACTGCAAGAAAGAGAGCAAGTGAAGCTGAGGTTTTTGAACC
CATCTCTTAAATCCTAGCCACTAGCTTTTCCGTTATGATCC
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