CF832213

Overview
NameCF832213
Unique NameCF832213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1050 contig Csv1_Contig1050:64..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832213 vs. ExPASy Swiss-Prot
Match: ASO_TOBAC (L-ascorbate oxidase OS=Nicotiana tabacum GN=AAO PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.027e-80
Identity = 139/215 (64.65%), Postives = 167/215 (77.67%), Query Frame = 2
Query:   17 VKGKKPATPPALTLLNYHPTSASKMPLSPPPITPIWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVTLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILHNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFV 661
            V+G++P TP  LTLLNY P SASK P  PPPI P+W+DY+HSKSFSNKIFALMGSPKPP   HRR+ LLNTQN I+G+TKWAINNV+L LP   YLGSI+YG+ +AFD   PP+NF  +YDV+K   N+N+T G+GVYML  NTT+D+IL NANA+  ++SE HPWHLHGHDFWVLG GEGKF+++D             TAVIFP+GWTALRFV
Sbjct:  310 VRGREPKTPQGLTLLNYLPNSASKFPTLPPPIAPLWNDYNHSKSFSNKIFALMGSPKPPPQNHRRIILLNTQNKIDGYTKWAINNVSLVLPTQLYLGSIRYGI-NAFDTKPPPDNFPKDYDVLKQAPNSNSTYGNGVYMLKFNTTIDIILQNANALAKDVSEIHPWHLHGHDFWVLGYGEGKFSEKDVKKFNLKNPPLRNTAVIFPFGWTALRFV 523          
BLAST of CF832213 vs. ExPASy Swiss-Prot
Match: ASO_CUCPM (L-ascorbate oxidase OS=Cucurbita pepo var. melopepo PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 2.928e-79
Identity = 134/217 (61.75%), Postives = 159/217 (73.27%), Query Frame = 2
Query:   14 GVKGKKPATPPALTLLNYHPTSASKMPLSPPPITPIWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVTLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILHNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVA 664
            G + + P TPP LTLLNY P S SK+P SPPP TP WDD+D SK+F+ +I A MGSPKPP  F+RR+ LLNTQN ING+ KWAIN+V+L LPPTPYLG++KY L  AFDQN PPE F  +YD+  PP N  T +G+GVY   +   VDVIL NAN ++ NLSETHPWHLHGHDFWVLG G+GKF+ E+E            T VIFPYGWTA+RFVA
Sbjct:  281 GTRARHPNTPPGLTLLNYLPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIFLLNTQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVA 497          
BLAST of CF832213 vs. ExPASy Swiss-Prot
Match: ASO_CUCSA (L-ascorbate oxidase OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 4.994e-79
Identity = 138/218 (63.30%), Postives = 159/218 (72.94%), Query Frame = 2
Query:   14 GVKGKKPATPPALTLLNYHPTSASKMPLSPPPITPIWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVTLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILHNANAIRPNLSETHPWHLHGHDFWVLGRGEGKF-TKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVA 664
            GV+ + P TPP LTLLNY P SASK+P+SPPP TP W+D+D SK+F+ +IFA MGSPKPP  ++RRL LLNTQN INGF KWAINNV+L LPPTPYL ++K  L  AF+QN PPE F   YD+  PP N  TT G+GVY   +  TVDVIL NAN + PN+SE HPWHLHGHDFWVLG GEGKF   EDE            T VIFPYGWTA+RFVA
Sbjct:  316 GVRARLPKTPPGLTLLNYLPNSASKLPISPPPETPHWEDFDRSKNFTFRIFAAMGSPKPPVRYNRRLFLLNTQNRINGFMKWAINNVSLALPPTPYLAAMKMRLNTAFNQNPPPETFPLNYDINNPPPNPETTTGNGVYKFNMGETVDVILQNANMLNPNMSEIHPWHLHGHDFWVLGYGEGKFYAPEDEKKLNLKNPPLRNTVVIFPYGWTAIRFVA 533          
BLAST of CF832213 vs. ExPASy Swiss-Prot
Match: ASO_CUCMA (L-ascorbate oxidase OS=Cucurbita maxima GN=AAO PE=1 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 3.237e-78
Identity = 133/217 (61.29%), Postives = 158/217 (72.81%), Query Frame = 2
Query:   14 GVKGKKPATPPALTLLNYHPTSASKMPLSPPPITPIWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVTLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILHNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVA 664
            G +G+ P TPP LTLLNY P S SK+P SPPP TP WDD+D SK+F+ +I A MGSPKPP   +RR+ LLNTQN ING+ KWAIN+V+L LPPTPYLG++K+ L  AFDQN PPE F  +YD+  PP N  T +G+GVY   +   VDVIL NAN ++ NLSE HPWHLHGHDFWVLG G+GKFT E+E            T VIFPYGWTA+RFVA
Sbjct:  311 GTRGRHPNTPPGLTLLNYLPNSVSKLPTSPPPETPAWDDFDRSKNFTYRITAAMGSPKPPVKSNRRIFLLNTQNVINGYVKWAINDVSLALPPTPYLGAMKFNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTKIGNGVYQFKIGEIVDVILQNANMMKENLSEIHPWHLHGHDFWVLGYGDGKFTAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVA 527          
BLAST of CF832213 vs. ExPASy Swiss-Prot
Match: LAC16_ARATH (Laccase-16 OS=Arabidopsis thaliana GN=LAC16 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 52/138 (37.68%), Postives = 70/138 (50.72%), Query Frame = 2
Query:  263 INNVTLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPP---VNANTTLGSGVYMLGLNTTVDVILHNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPY-GWTALRFVA 664
            INNVT  +P T  L +  + +   F  + P +  SN YD   P    VNA T  G+ +Y L  N TV ++L N   I   LS+ HP+HLHG +F+ +GRG G F  E +              V  P  GWTA+RF+A
Sbjct:  387 INNVTFTMPKTALLQAHFFNISGVFTDDFPAKP-SNPYDYTAPVKLGVNAATMKGTKLYRLPYNATVQIVLQNTAMI---LSDNHPFHLHGFNFFEVGRGLGNFNPEKDPKAFNLVDPVERNTVGVPAGGWTAIRFIA 520          
BLAST of CF832213 vs. ExPASy Swiss-Prot
Match: LAC22_ORYSJ (Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC22 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.385e-12
Identity = 44/133 (33.08%), Postives = 61/133 (45.86%), Query Frame = 2
Query:  263 INNVTLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILHNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPY-GWTALRF 658
            INNVT  +P TP L +  Y +   F ++ P             P N  T  G+ VY L  N +V V+L +   I P   E+HP HLHG +F+V+G+G G +                   +  P  GWTA+RF
Sbjct:  387 INNVTFIMPSTPILQAHYYNIPGVFTEDFPATPLHKFNYTGSGPKNLQTMNGTRVYRLPYNASVQVVLQDTGIISP---ESHPIHLHGFNFFVVGKGVGNYNPRTSPSTFNLIDPIERNTIGVPTGGWTAIRF 516          
BLAST of CF832213 vs. ExPASy Swiss-Prot
Match: LAC2_ORYSJ (Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  260 AINNVTLNLPPTPYLGSIKYGLKDAFDQN---GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILHNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPY-GWTALRFVA 664
            ++NN+T  +P T  L +  YG K  F  +    PP  F+  Y  +       T+LG+ +  +  N TV+++L + N +     E+HP+HLHG++F+V+GRG G F    +              V  P  GWTA+RF A
Sbjct:  383 SLNNITFVMPRTALLQAHYYGQKGVFAADFPDRPPARFN--YTGVPLTAGLGTSLGTRLSKIAYNATVELVLQDTNLLSV---ESHPFHLHGYNFFVVGRGVGNFDPAKDPAKYNLVDPPERNTVGVPAGGWTAIRFRA 516          
BLAST of CF832213 vs. ExPASy Swiss-Prot
Match: LAC10_ARATH (Laccase-10 OS=Arabidopsis thaliana GN=LAC10 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 44/136 (32.35%), Postives = 65/136 (47.79%), Query Frame = 2
Query:  260 AINNVTLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILHNANAIRPNLSETHPWHLHGHDFWVLGRGEGKF-TKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVA 664
            AINN+T  +P T  L +  + L   +  + P +         KPP N  T   + +Y L  N+TV V+L +   + P   E HP HLHG +F+V+G G G + +K+D             T  +   GW A+RF A
Sbjct:  380 AINNITFKMPKTALLQAHYFNLTGIYTTDFPAKPRRVFDFTGKPPSNLATMKATKLYKLPYNSTVQVVLQDTGNVAP---ENHPIHLHGFNFFVVGLGTGNYNSKKDSNKFNLVDPVERNTVGVPSGGWAAIRFRA 512          
BLAST of CF832213 vs. ExPASy Swiss-Prot
Match: LAC12_ARATH (Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 66/232 (28.45%), Postives = 99/232 (42.67%), Query Frame = 2
Query:   56 LLNYHPTSASKMPLSPPPITPIWDDYDHSKSFSNKIFALMGSPKPPT--------------NFHRRLTLLNTQNTING--FTKWAINNVTLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTT------------LGSGVYMLGLNTTVDVILHNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVA 664
            +L Y  T+ +  P+ P  + P ++D +   SFS K  +L     P T              N  ++      Q  +NG  FT  ++NNV+  LP         + L  A   NG P  F+ ++   KPPV  + T             G+ +Y L   + V V+L + N +    SE HP HLHG+DF+++G G G F  K+D             T  +   GW  +RFVA
Sbjct:  304 ILQYKKTTTTSKPIMP--VLPAFNDTNTVTSFSRKFKSLRNVVVPKTIDDNLFFTIGLGLDNCPKKFPKSRCQG-LNGTRFTA-SMNNVSFVLPSN-------FSLLQAHS-NGIPGVFTTDFP-SKPPVKFDYTGNNISRALFQPVKGTKLYKLKYGSRVQVVLQDTNIVT---SENHPIHLHGYDFYIVGEGFGNFNPKKDTSKFNLVDPPLRNTVAVPVNGWAVIRFVA 519          
BLAST of CF832213 vs. ExPASy Swiss-Prot
Match: LAC11_ORYSJ (Putative laccase-11 OS=Oryza sativa subsp. japonica GN=LAC11 PE=5 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.000e-11
Identity = 65/232 (28.02%), Postives = 102/232 (43.97%), Query Frame = 2
Query:   47 ALTLLNYH--PTSASKMPLSPPPITPIWDDYDHSKSFSNKIFALMGSPKP---PTNFHRRLTLL------NTQNTINGF------TKWA--INNVTLNLPPTPYLGS-IKYGLKDAFDQNGP-----PENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILHNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFP-YGWTALRFVA 664
            A+ +L Y+   TSA+ +   P P  P ++D     +FS    +L  +  P   P    R             Q+ +NG       T++A  +NNV+  +P T  L +  +         N P     P N++       PP N   T G+ V  L  NTTV+V+L + + +    +E+HP HLHG+DF+V+G G G +   ++              +  P  GW A+RFVA
Sbjct:  270 AVAVLEYYGAATSAAALRSLPLPSLPAYNDTGAVANFSASFRSLASAQYPARVPRTVDRHFFFAVGLGADPCQSPVNGTCQGPNNTRFAASMNNVSFVMPRTSLLQAHYQRRYNGVLAANFPAAPRTPFNYTGT-----PPNNTFVTHGTRVVPLSFNTTVEVVLQDTSILG---AESHPLHLHGYDFYVVGTGFGNYDASNDTAKYNLVDPVQRNTISVPTAGWVAIRFVA 493          
The following BLAST results are available for this feature:
BLAST of CF832213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ASO_TOBAC2.027e-8064.65L-ascorbate oxidase OS=Nicotiana tabacum GN=AAO PE... [more]
ASO_CUCPM2.928e-7961.75L-ascorbate oxidase OS=Cucurbita pepo var. melopep... [more]
ASO_CUCSA4.994e-7963.30L-ascorbate oxidase OS=Cucumis sativus PE=1 SV=1[more]
ASO_CUCMA3.237e-7861.29L-ascorbate oxidase OS=Cucurbita maxima GN=AAO PE=... [more]
LAC16_ARATH1.748e-1537.68Laccase-16 OS=Arabidopsis thaliana GN=LAC16 PE=2 S... [more]
LAC22_ORYSJ1.385e-1233.08Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC2_ORYSJ4.031e-1232.37Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 ... [more]
LAC10_ARATH1.173e-1132.35Laccase-10 OS=Arabidopsis thaliana GN=LAC10 PE=2 S... [more]
LAC12_ARATH1.532e-1128.45Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 S... [more]
LAC11_ORYSJ2.000e-1128.02Putative laccase-11 OS=Oryza sativa subsp. japonic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01H24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832213 ID=CF832213; Name=CF832213; organism=Citrus sinensis; type=EST; length=665bp
TAGATCTCAGCCAGGTGTTAAGGGAAAAAAACCTGCAACTCCTCCGGCCC
TAACTCTCTTAAACTATCATCCCACTTCTGCTTCCAAAATGCCTCTATCC
CCGCCACCTATAACTCCTATATGGGACGACTATGATCACAGCAAATCATT
CTCCAACAAAATATTTGCCCTAATGGGATCCCCCAAGCCTCCCACAAATT
TCCACCGTCGGCTCACCCTTCTTAACACTCAAAACACCATTAACGGGTTC
ACTAAGTGGGCTATTAACAATGTGACCCTGAATTTACCCCCCACTCCTTA
CTTAGGATCCATCAAATATGGTCTTAAAGATGCTTTTGATCAGAATGGTC
CCCCCGAAAACTTCTCGAATGAGTATGACGTGATGAAACCTCCTGTAAAC
GCTAATACAACTCTTGGAAGTGGGGTTTACATGCTTGGTTTAAACACCAC
TGTTGATGTTATACTTCATAATGCAAACGCGATAAGGCCAAACTTGAGTG
AAACCCACCCTTGGCATTTGCATGGGCATGATTTTTGGGTATTAGGGCGC
GGAGAAGGGAAGTTTACGAAAGAAGATGAGAAGAAATTTAACTTGAAGAA
TCCACCATTGAAAAATACTGCGGTGATATTCCCATATGGCTGGACTGCTT
TAAGATTTGTTGCTG
back to top