CF832216

Overview
NameCF832216
Unique NameCF832216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7215 contig Csv1_Contig7215:111..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832216 vs. ExPASy Swiss-Prot
Match: GAT16_ARATH (GATA transcription factor 16 OS=Arabidopsis thaliana GN=At3g06740 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.995e-30
Identity = 83/160 (51.88%), Postives = 98/160 (61.25%), Query Frame = -2
Query:  136 MMDPSVKGLESAEVNS-----------SGSKRLDGVSSDENSIKKPCADCGPTKTPLWRGGPAGPKSLCNASGIRSRKKRRAILGILKEAXXXXXXXXXXXXXXXXXKLGDSLKQRLYALGREVLMQRSIVVKQRK-KLGEEEQAAVLLMALSY-GSVYA 576
            M+DP+ K ++S  + S           S S   + +S++    KK CA CG +KTPLWRGGPAGPKSLCNA GIR+RKKRR ++    E                  K GDSLKQRL  LGREV+MQRS    QR+ KLGEEEQAAVLLMALSY  SVYA
Sbjct:    1 MLDPTEKVIDSESMESKLTSVDAIEEHSSSSSNEAISNE----KKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSE-------DKKKKSHNRNPKFGDSLKQRLMELGREVMMQRSTAENQRRNKLGEEEQAAVLLMALSYASSVYA 149          
BLAST of CF832216 vs. ExPASy Swiss-Prot
Match: GAT23_ARATH (GATA transcription factor 23 OS=Arabidopsis thaliana GN=At5g49300 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.739e-28
Identity = 76/149 (51.01%), Postives = 90/149 (60.40%), Query Frame = -2
Query:  136 MMDPSVKGL--ESAEVNSSGSKRLDGVSSDENSIKKPCADCGPTKTPLWRGGPAGPKSLCNASGIRSRKKRRAILGILKEAXXXXXXXXXXXXXXXXXKLGDSLKQRLYALGREVLMQRSIVVKQRKKLGEEEQAAVLLMALSYGSVYA 576
            M+D S K L  +S  + +     ++  ++  N  KK CADCG +KTPLWRGGP GPKSLCNA GIR+RKKRR                          K G+SLKQ L  LG   + +RS V KQR+KLGEEEQAAVLLMALSYGSVYA
Sbjct:    1 MLDHSEKVLLVDSETMKTRAEDMIEQNNTSVNDKKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRG-------GTEDNKKLKKSSSGGGNRKFGESLKQSLMDLG---IRKRSTVEKQRQKLGEEEQAAVLLMALSYGSVYA 139          
BLAST of CF832216 vs. ExPASy Swiss-Prot
Match: GAT17_ARATH (GATA transcription factor 17 OS=Arabidopsis thaliana GN=At3g16870 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 68/174 (39.08%), Postives = 85/174 (48.85%), Query Frame = -2
Query:  136 LESAEVNSSGSKRLDGVSSDENSIKKPCADCGPTKTPLWRGGPAGPKSLCNASGIRSRKKRRAILGILKEAXXXXXXXXXXXXXXXXXKLGDSLK--------------------------------QRLYALGREV-LMQRSIVVKQR--KKLGEEEQAAVLLMALSYGSVYA 552
            +++   +SSGS    G  S     K+ C DCG  +TPLWRGGPAGPKSLCNA GI+SRKKR+A LG+  E                  +     K                                 +   LG +V +M+RS V K+R  +KLGEEE+AAVLLMALS  SVYA
Sbjct:   21 VDNENCSSSGS----GGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKFLDLGFKVPVMKRSAVEKKRLWRKLGEEERAAVLLMALSCSSVYA 190          
BLAST of CF832216 vs. ExPASy Swiss-Prot
Match: GAT22_ARATH (GATA transcription factor 22 OS=Arabidopsis thaliana GN=At5g26930 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = -2
Query:  136 DENSIKKPCADCGPTKTPLWRGGPAGPKSLCNASGIRSRKKRRA-ILGILKEAXXXXXXXXXXXXXXXXXKLGDSLKQRLYALGREVLMQRS----IVVKQRKKLGEEEQAAVLLMALSYGSVYA 495
            +E    + C++C  TKTP+WRGGP GPKSLCNA GIR RK+RR+ +LGI                          ++       +++ +  S    + VK+R+ L EEEQAA+ L+ LS  SV A
Sbjct:   20 EEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGI------------------------HIIRSHKSLASKKINLLSSSHGGVAVKKRRSLKEEEQAALCLLLLSCSSVLA 120          
BLAST of CF832216 vs. ExPASy Swiss-Prot
Match: GAT20_ARATH (Putative GATA transcription factor 20 OS=Arabidopsis thaliana GN=At4g26150 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = -2
Query:  358 NSSGSKRLDGVSSDENSIKKPCADCGPTKTPLWRGGPAGPKSLCNASGIRSRKKRRAIL 534
            N S S+R +G ++D   + + C+DC  TKTPLWR GP GPKSLCNA GIR RK RRA +
Sbjct:  182 NLSNSERQNGYNND--CVIRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAM 238          
BLAST of CF832216 vs. ExPASy Swiss-Prot
Match: GAT24_ARATH (GATA transcription factor 24 OS=Arabidopsis thaliana GN=At5g56860 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = -2
Query:  358 SDENSIKKPCADCGPTKTPLWRGGPAGPKSLCNASGIRSRKKRRAIL 498
            S+ N + + C+DC  TKTPLWR GP GPKSLCNA GIR RK RRA +
Sbjct:  223 SNNNGVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAM 269          
The following BLAST results are available for this feature:
BLAST of CF832216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GAT16_ARATH3.995e-3051.88GATA transcription factor 16 OS=Arabidopsis thalia... [more]
GAT23_ARATH3.739e-2851.01GATA transcription factor 23 OS=Arabidopsis thalia... [more]
GAT17_ARATH1.090e-1939.08GATA transcription factor 17 OS=Arabidopsis thalia... [more]
GAT22_ARATH1.992e-1337.60GATA transcription factor 22 OS=Arabidopsis thalia... [more]
GAT20_ARATH2.876e-1257.63Putative GATA transcription factor 20 OS=Arabidops... [more]
GAT24_ARATH8.368e-1263.83GATA transcription factor 24 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01I02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832216 ID=CF832216; Name=CF832216; organism=Citrus sinensis; type=EST; length=739bp
TTTTTTTTTTTTTTTTTGTTGAAAAAACTCATCATCATAATATCATTTGG
GCAAAGGGGACATCCATAAAATCCTAGTATTATTCTTATTATGATTATTA
CTGATTTGATTTTTTTTTTTTCGGGTAATCAACTAAGCATAAACAGAACC
ATAAGATAAAGCCATTAACAAAACAGCAGCTTGCTCTTCTTCTCCAAGCT
TCTTTCTTTGCTTCACCACAATTGATCGTTGCATCAAAACTTCTCTTCCC
AATGCGTACAATCTTTGCTTTAATGAATCCCCAAGCTTATTACTTGAGCT
ATTACTGCTGCTATTGCTGTTGCCTCTCTTTGATTTTTTCGCCTCTTTAA
GGATTCCCAATATTGCCCTCCTCTTCTTCCTGCTCCTTATCCCGGATGCA
TTACACAGTGACTTGGGGCCAGCGGGGCCACCGCGCCACAGTGGGGTCTT
GGTGGGCCCACAATCAGCACAGGGCTTTTTGATACTATTTTCATCCGAAG
AAACCCCATCAAGCCTCTTGCTGCCGCTGCTGTTCACTTCTGCGGATTCC
AATCCTTTGACACTCGGATCCATCATGTTAAGAAGATTTGTCAAGAAACT
AAGACTGACCCAGGGGAAAAAAAATTGAAAACTGAAGTGGGTTTTGATCA
AAACGGAAGGTAACCACTCTAGCTAATGATTTGGAATGAAGCTATTAGCT
GGCCGGGGCTAAAAATGAATGAAGGAAAGAATGAATGAA
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