CF832219

Overview
NameCF832219
Unique NameCF832219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6019 contig Csv1_Contig6019:177..1016. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832219 vs. ExPASy Swiss-Prot
Match: TM208_DANRE (Transmembrane protein 208 OS=Danio rerio GN=tmem208 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.343e-19
Identity = 46/122 (37.70%), Postives = 75/122 (61.48%), Query Frame = -1
Query:  478 QGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIILHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPA 840
            +G K+  EEN   ++   R+I+  N IY  V +++ +++ ++  W  L+     Y   Y+ +SAMAKP + +DG L+DGG D++   G+  +L DVI +T+ VQV+S LS  FWY +L+ PA
Sbjct:   10 KGKKQIHEENQDTLKFYSRIILGANAIYIAVNLLLFYNSSSFWTWFSLMFAVAVYVGSYRSMSAMAKPAFAEDGSLLDGGIDLNMEQGMAEHLKDVILLTAIVQVLSTLSSYFWYLWLLAPA 131          
BLAST of CF832219 vs. ExPASy Swiss-Prot
Match: TM208_DICDI (Transmembrane protein 208 homolog OS=Dictyostelium discoideum GN=tmem208 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.371e-18
Identity = 44/125 (35.20%), Postives = 73/125 (58.40%), Query Frame = -1
Query:  463 GAKKRKEENARHMEKLRRLIIACNVIYFVVRMIILHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAYQ 837
            GAKKRK +N + + K+R ++ A  + Y + R++    TF    W   +  +      Y  +++M K TY ++GELIDGG D++ GG+  Y  D+IY+   +Q + ++S+K  Y  LVIPAF  ++
Sbjct:    5 GAKKRKTQNEKELFKVRLIMAAGTIPYILYRVVYHSETFGGWLWFAYLSLNALNMFAYYIITSMCKLTYDNNGELIDGGSDLNQGGMTEYYFDIIYVCCIIQGLGLISDKCLYLILVIPAFAIFK 129          
BLAST of CF832219 vs. ExPASy Swiss-Prot
Match: TM208_BOVIN (Transmembrane protein 208 OS=Bos taurus GN=TMEM208 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.045e-16
Identity = 41/126 (32.54%), Postives = 74/126 (58.73%), Query Frame = -1
Query:  466 QGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIILHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 840
            +G K+  EEN   ++   R+I+  N IY +V +++ +S+ ++  W+ L+ +   Y   Y  +S+MA+  +++DG L+DGG D++   G+  +L DVI +T+ VQV+S  S   W  +L+ P    Y
Sbjct:   10 RGKKQIFEENKETLKFYLRIILGANAIYCLVTLVVFYSSASFWAWMALLFSLAVYGASYHSMSSMARAAFSEDGALVDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYIWSFWLLAPGRALY 135          
BLAST of CF832219 vs. ExPASy Swiss-Prot
Match: TM208_MOUSE (Transmembrane protein 208 OS=Mus musculus GN=Tmem208 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.622e-15
Identity = 41/126 (32.54%), Postives = 73/126 (57.94%), Query Frame = -1
Query:  466 QGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIILHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 840
            +G K+  EEN   ++   R+I+  N IY +V ++  +S+ ++  W+ L  +   Y   Y  +S+MA+ ++++DG L+DGG D++   G+  +L DVI +T+ VQV+S  S   W  +L+ P    Y
Sbjct:   10 RGKKQIFEENKETLKFYLRIILGANAIYCLVTLVFFYSSASFWAWMALGFSLAVYGASYHSMSSMARASFSEDGSLMDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYIWSFWLLAPGRALY 135          
BLAST of CF832219 vs. ExPASy Swiss-Prot
Match: TM208_XENLA (Transmembrane protein 208 OS=Xenopus laevis GN=tmem208 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.841e-15
Identity = 38/126 (30.16%), Postives = 73/126 (57.94%), Query Frame = -1
Query:  466 QGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIILHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 840
            +G K+  EEN   +    R+I+   V+   + + + +S+  +  W  LV + + YA  Y+ + +MA+ ++++DG L+DGG D++   G+  ++ D++ +T+ VQV+S  S  FWY +L+ P    Y
Sbjct:   10 KGKKQIYEENKETLSFYLRIILGATVLCGAINLGVFYSSSNFWTWATLVFSGIVYAGAYRSMRSMAQASFSEDGSLLDGGIDLNMEQGMAEHIKDIVLLTAIVQVLSCFSLYFWYFWLLAPGRALY 135          
BLAST of CF832219 vs. ExPASy Swiss-Prot
Match: TM208_HUMAN (Transmembrane protein 208 OS=Homo sapiens GN=TMEM208 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.841e-15
Identity = 41/126 (32.54%), Postives = 72/126 (57.14%), Query Frame = -1
Query:  466 QGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIILHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMS-TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 840
            +G K+  EEN   ++   R+I+  N IY +V ++  +S+ ++  W+ L  +   Y   Y  +S+MA+  +++DG L+DGG D++   G+  +L DVI +T+ VQV+S  S   W  +L+ P    Y
Sbjct:   10 RGKKQIFEENRETLKFYLRIILGANAIYCLVTLVFFYSSASFWAWLALGFSLAVYGASYHSMSSMARAAFSEDGALMDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYVWSFWLLAPGRALY 135          
BLAST of CF832219 vs. ExPASy Swiss-Prot
Match: TM208_CHICK (Transmembrane protein 208 OS=Gallus gallus GN=TMEM208 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.944e-14
Identity = 41/135 (30.37%), Postives = 68/135 (50.37%), Query Frame = -1
Query:  466 QGAKKRKEENARHMEKLRRLIIACNVIYFVVRMIILHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMST----GGICGYLH------DVIYITSFVQVMSILSEKFWYTYLVIPAFGAY 840
            +G K+  EEN   +    R+I+  + +Y  V +++ +   +   W+    +S  Y   Y+ +S+MA+P + DDG L DGG D++        C + H      DVI +T+ VQV+S  S   WY +L+ P    Y
Sbjct:   10 KGKKQIFEENRETLRFYLRIILGASAVYAAVNLVVFYPAASAWTWLAFAFSSAVYGASYRSMSSMARPAFADDGSLADGGIDLNMEQGWQSECPHPHEPRHLKDVILLTAMVQVLSCFSLYVWYFWLLAPGRALY 144          
The following BLAST results are available for this feature:
BLAST of CF832219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM208_DANRE1.343e-1937.70Transmembrane protein 208 OS=Danio rerio GN=tmem20... [more]
TM208_DICDI7.371e-1835.20Transmembrane protein 208 homolog OS=Dictyostelium... [more]
TM208_BOVIN4.045e-1632.54Transmembrane protein 208 OS=Bos taurus GN=TMEM208... [more]
TM208_MOUSE2.622e-1532.54Transmembrane protein 208 OS=Mus musculus GN=Tmem2... [more]
TM208_XENLA5.841e-1530.16Transmembrane protein 208 OS=Xenopus laevis GN=tme... [more]
TM208_HUMAN5.841e-1532.54Transmembrane protein 208 OS=Homo sapiens GN=TMEM2... [more]
TM208_CHICK4.944e-1430.37Transmembrane protein 208 OS=Gallus gallus GN=TMEM... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01I04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832219 ID=CF832219; Name=CF832219; organism=Citrus sinensis; type=EST; length=840bp
TTTTTTTTTTTTTTTTTCATCCTGAACCTGCTCTATGTATAAATCCATTA
TGGACTGCAACAATAACAATTGCTTCCAACACCAAGTGAAGAAAATTTTG
TACATAGGAAGTATGATTGATACTACTGTCTAGACCTTACCAAGCATTGA
TTACATCAAAATTCCTCCTTTCTTTCACTTGGCAAGGAAAGTGAAATTTC
TATTTAGCCATGACAATGTTACAGACTTGAGTAAGTTATGTAATACGATT
CAACTTCTTTTCATGGTAGTCTGAAATTTAAGAGCAGCATTTCTCGTACT
TGTAGTAAGATCACTTCAAATGTTTGATTATCTAGTTCTTGTCTTGACGA
ACTTGCCTCGTGAAGCCTTCTTCTCCATCTTTTCCCTCTTTTTGCGAGTC
TTTTCATCCTCCGTGTCTCCCTCTGAACCTTGCGGCAAAAATCCTTTAAT
GAAACCAAAGGATTGGTACGCTCCAAATGCTGGTATCACCAGATATGTGT
ACCAAAATTTTTCAGAGAGAATGGACATGACTTGCACAAAGCTTGTGATG
TAGATAACATCATGTAAATAGCCACAAATTCCACCAGTGCTCATATCAAA
TCCACCATCAATAAGTTCCCCATCATCAGTATATGTAGGTTTTGCCATCG
CAGAAAGCTGTTGATATGGAATCGCATATGCCACAGATGTCAAAACTAGA
CCCACCCAGTGCTTCCATGTGAATGTGGAATGAAGGATAATCATCCTCAC
CACGAAATATATAACATTGCAGGCAATAATGAGACGACGTAGCTTTTCCA
TATGCCGTGCGTTCTCTTCCTTGCGCTTCTTGGCTCCTTG
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