CF832228

Overview
NameCF832228
Unique NameCF832228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3889 contig Csv1_Contig3889:193..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF832228 vs. ExPASy Swiss-Prot
Match: HBPL1_ARATH (Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21
Identity = 74/200 (37.00%), Postives = 109/200 (54.50%), Query Frame = -3 
Query:  157 VETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPST----FKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVIT-KSSPEGEKIAMTAPVVT-KSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGQRKYGVVKFGGVASDEVVGEKVDKLKKSLEKDG-YKVIG--QFLLARYNPPWTLPPFRTNEVMIPVE 729
            +ET  + V+  T  YEIR+  P  VAE      T    +  +K   F+VLA Y+      +NT  EK+ MT PV+T K    GEK+ MT PV+T K+ ++    M FV+P KY      P P D  V I++  ++   VV F G  +DE +  +  +L+++L+ D  ++V     F +A+YNPP+TLP  R NEV + VE
Sbjct:  114 LETMNFRVLFRTDKYEIRQVEPYFVAETIMPGETGFDSYGASKS--FNVLAEYLFG----KNTIKEKMEMTTPVVTRKVQSVGEKMEMTTPVITSKAKDQNQWRMSFVMPSKY--GSNLPLPKDPSVKIQQVPRKIVAVVAFSGYVTDEEIERRERELRRALQNDKKFRVRDGVSFEVAQYNPPFTLPFMRRNEVSLEVE 305
The following BLAST results are available for this feature:
BLAST of CF832228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HBPL1_ARATH1.183e-2137.00Heme-binding-like protein At3g10130, chloroplastic... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01I10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832228 ID=CF832228; Name=CF832228; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTTTTTTTGAACACAAACATCAAAACTTGCATTATCGACTT
AATTGCATATATTATCTAAGAACAAGCATCATCGGCATTACGCAGAATCC
TATGATTGCATAAACTGCGAAAAGAAAAATCAAACTACAAACAGAGAAAC
CAGTCACTCAACTGGAATCATAACCTCATTAGTCCTGAAAGGCGGCAAAG
TCCAAGGTGGGTTATACCTAGCCAGTAAAAACTGCCCAATAACTTTATAC
CCATCTTTCTCCAAGCTTTTCTTCAGCTTATCAACTTTCTCACCCACCAC
TTCATCTGATGCAACTCCTCCAAATTTCACCACCCCATATTTCCTCTGCC
CCTCTTCTCTTATCACCACCCTCTCATCCACTGGCTTCGGTGCCTCCTCC
GCCTTCTGATACTTCTCCGGCAACACAAACTGCATTGTCACCATCTTCTT
CTCATCACTCTTTGTCACCACTGGAGCCGTCATGGCAATCTTCTCCCCTT
CAGGTGAGGACTTTGTTATCACCGGAGCTGTCATGGCAATCTTTTCAGGC
TTGGTGTTCTGCGGATTGCCTAATGCACCGATGTAATTTGCCAACACCGA
AAAGCCTCCATCCTTGTTACCCTTGAATGTTGACGGGTCATATGTGACTT
CTGCTACAACTGAGGGCGCATATTTGCGGATTTCATAGTCGAAGGTTGAT
TGAATCACTTCATATTTTGGAGTTTCAACGCTGATTTTCCCAAAAA
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