CF832234

Overview
NameCF832234
Unique NameCF832234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6216 contig Csv1_Contig6216:44..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: R35A3_ARATH (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.347e-54
Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = -2
Query:  233 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 568
            MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSL+QIEGVN +E+V+WY GKRMAYIYKAK KKNGS YRCIWGKV RPHGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct:    1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: R35A1_ARATH (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.347e-54
Identity = 101/112 (90.18%), Postives = 104/112 (92.86%), Query Frame = -2
Query:  233 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 568
            MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSL+Q+EGVN  E+VSWY GKRMAYIYKAK KKNGS YRCIWGKV RPHGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct:    1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: R35A2_ARATH (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.652e-53
Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = -2
Query:  233 VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 565
            +KGRQGERVRLYVRGT+LGYKRSKSNQYPNTSLIQIEGVN +E+V+WY GKR+AYIYKAK KKNGS YRCIWGKV RPHGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct:    1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: R35A4_ARATH (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.261e-52
Identity = 96/111 (86.49%), Postives = 104/111 (93.69%), Query Frame = -2
Query:  233 VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 565
            +KGRQGERVRLYVRGT+LGYKRSKSNQYPNTSL+QIEGVN +E+V+WY GKR+AYIYKAK KKNGS YRCIWGKV RPHGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct:    1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL33A_YEAST (60S ribosomal protein L33-A OS=Saccharomyces cerevisiae GN=RPL33A PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 2.828e-28
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = -2
Query:  233 ERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 547
            E  RLYV+G  L Y+RSK    PN SLI+IEGV   +D  +Y GKR+AY+Y+A  +  GS  R +WGKV R HGNSGVVRA F++NLP K+ G  VR+F+YPSNI
Sbjct:    3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL33B_YEAST (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae GN=RPL33B PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 8.228e-28
Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = -2
Query:  233 ERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 547
            E  RLYV+G  L Y+RSK    PN SLI+IEGV   ++  +Y GKR+AY+Y+A  +  GS  R +WGKV R HGNSGVVRA F++NLP K+ G  VR+F+YPSNI
Sbjct:    3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL33A_SCHPO (60S ribosomal protein L33-A OS=Schizosaccharomyces pombe GN=rpl33a PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26
Identity = 54/102 (52.94%), Postives = 73/102 (71.57%), Query Frame = -2
Query:  233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538
            RLYV+   L ++RSK   +P TSL++IEG + KE+  +Y GKR+ ++YK+     GS  R IWG V+RPHGNSGVVRA+F  NLPPK+ G  +RV +YPSN+
Sbjct:    7 RLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL33B_SCHPO (60S ribosomal protein L33-B OS=Schizosaccharomyces pombe GN=rpl33b PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.006e-25
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = -2
Query:  233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAKVKKNGSPYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538
            RLYV+   L ++RSK   +P TS+++IEG + KE+  +Y GKR+ Y+YK+     GS  R IWG +ARPHGNSG VRA+F  NLP K+ G  +RV +YPSNI
Sbjct:    7 RLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_XENLA (60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 58/107 (54.21%), Postives = 75/107 (70.09%), Query Frame = -2
Query:  233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPYRC--IWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538
            RL+ + T  GYKR   NQ  +T+L++IEGV  +++  +Y GKR AY+YKAK   V   G P R   IWGKV R HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:    4 RLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGKPNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CF832234 vs. ExPASy Swiss-Prot
Match: RL35A_ICTPU (60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2
Query:  233 RLYVRGTILGYKRSKSNQYPNTSLIQIEGVNPKEDVSWYCGKRMAYIYKAK---VKKNGSPY--RCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 538
            RL+ +    GYKR   NQ  +T+L+++EGV  + +V +Y GKR AY+YKAK   V   G P   R IWGKV R HGNSG+VRAKF SNLPPK++G R+RV +YPS +
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110          
The following BLAST results are available for this feature:
BLAST of CF832234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
R35A3_ARATH1.347e-5490.1860S ribosomal protein L35a-3 OS=Arabidopsis thalia... [more]
R35A1_ARATH1.347e-5490.1860S ribosomal protein L35a-1 OS=Arabidopsis thalia... [more]
R35A2_ARATH9.652e-5387.3960S ribosomal protein L35a-2 OS=Arabidopsis thalia... [more]
R35A4_ARATH1.261e-5286.4960S ribosomal protein L35a-4 OS=Arabidopsis thalia... [more]
RL33A_YEAST2.828e-2857.1460S ribosomal protein L33-A OS=Saccharomyces cerev... [more]
RL33B_YEAST8.228e-2856.1960S ribosomal protein L33-B OS=Saccharomyces cerev... [more]
RL33A_SCHPO2.027e-2652.9460S ribosomal protein L33-A OS=Schizosaccharomyces... [more]
RL33B_SCHPO1.006e-2551.9660S ribosomal protein L33-B OS=Schizosaccharomyces... [more]
RL35A_XENLA1.314e-2554.2160S ribosomal protein L35a OS=Xenopus laevis GN=rp... [more]
RL35A_ICTPU1.314e-2553.2760S ribosomal protein L35a OS=Ictalurus punctatus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832234 ID=CF832234; Name=CF832234; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTTCCCCAAATATGCAGTAAGATAGAACCTTTTGGG
GCAAAAAATTCTGACATCAGTTTTAGCGAAAACATTGTCTCATTTACTAT
CCTAATGAAACAAAAATGATTCAGCTCCATAACACACATGAATTCAAATC
TAGCTTATAACACAAGTTAAAAAGCAGATTCTTTCGAGTTGTCAACAACC
TCAATCTGACATCTATGGGCCGAAGGACCTCAGATGTTGCTGGGGTACAT
GAAGACCCTAACTCTGTCTCCCATGGACTTTGGAGGCAGATTGGACTTGA
ATTTAGCACGAACAACCCCACTGTTTCCATGAGGCCTTGCGACCTTGCCC
CAAATGCAACGATAGGGTGATCCATTCTTCTTCACTTTAGCCTTGTAAAT
GTAAGCCATACGCTTCCCACAGTACCATGACACATCTTCCTTGGGGTTCA
CTCCCTCAATTTGAATCAATGAAGTGTTTGGGTACTGGTTGGACTTCGAC
CTCTTGTATCCGAGGATGGTTCCTCTGACATAGAGTCTGACTCGCTCTCC
TTGTCGTCCCTTTACCATTTTGACTGAACAACACAACAAGCTCTGCAAGT
GAGACTGAGGCTGCGAGCGATACAAAATAAGAGCA
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