CF832236

Overview
NameCF832236
Unique NameCF832236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6048 contig Csv1_Contig6048:24..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832236 vs. ExPASy Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.795e-19
Identity = 45/62 (72.58%), Postives = 57/62 (91.94%), Query Frame = 1
Query:   16 MKVVAAYPLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 201
            MKV+AA+ LA+LGGNTSP+ +D+K IL SVGAD +D+++ELLLS+VKGKDITELIASGRE+L
Sbjct:    1 MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRERL 62          
BLAST of CF832236 vs. ExPASy Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.018e-18
Identity = 52/113 (46.02%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   16 MKVVAAYPLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 354
            MKV+AAY LAVLGGNTSP+ADD+K IL SVGA+ ++ +LE LL+E+K KDITE+IA+GRE+L                                         D+DMGFSLFD
Sbjct:    1 MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRERLSSVPSGGGAIDMGAPAAVAGGGAAPAEEAKKEEKVEEKEESDEDMGFSLFD 113          
BLAST of CF832236 vs. ExPASy Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 1
Query:   16 MKVVAAYPLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 201
            MKVVAAY LAVL G  SP++ DIK ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GREKL
Sbjct:    1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of CF832236 vs. ExPASy Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.529e-17
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 1
Query:   16 MKVVAAYPLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 201
            MKV AA+ LAVLGGN +PSAD+IK I+G+VGAD +   +ELLL EV GKDI ELIASGREKL
Sbjct:    1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKL 62          
BLAST of CF832236 vs. ExPASy Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.529e-17
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 1
Query:   16 MKVVAAYPLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 201
            MKVVAA+ LAVL G  SP+  DIK ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GREKL
Sbjct:    1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of CF832236 vs. ExPASy Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 51/113 (45.13%), Postives = 60/113 (53.10%), Query Frame = 1
Query:   16 MKVVAAYPLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 354
            MK VAAY LAVL GN SPSADD+  IL SVG + ++ ++ELLLS++ GKDITELIA+GREK                                          DDDMGFSLFD
Sbjct:    1 MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGREKF-ASVPCGGGGVAVAAAAPAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 112          
BLAST of CF832236 vs. ExPASy Swiss-Prot
Match: RLA2_BRAFL (60S acidic ribosomal protein P2 OS=Branchiostoma floridae PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.228e-15
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 1
Query:   16 MKVVAAYPLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 201
            M+ VAAY LAVLGGN +PSA DIK ILGSVG D ED RL  ++ E+KGKDI E++A+GR KL
Sbjct:    1 MRYVAAYLLAVLGGNANPSAGDIKKILGSVGIDAEDERLNKVIGELKGKDIEEVMAAGRGKL 62          
BLAST of CF832236 vs. ExPASy Swiss-Prot
Match: RLA2_ALTAL (60S acidic ribosomal protein P2 OS=Alternaria alternata GN=ALTA5 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 47/113 (41.59%), Postives = 58/113 (51.33%), Query Frame = 1
Query:   16 MKVVAAYPLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 354
            MK +AAY L  LGGNTSPSA D+K +L SVG + + +RL+ L+SE++GKDI ELIASG EKL                                         D+DMGF LFD
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKLASVPSGGAGGAAASGGAAAAGGSAQAEAAPEAAKEEEKEESDEDMGFGLFD 113          
BLAST of CF832236 vs. ExPASy Swiss-Prot
Match: RLA2_FUSCU (60S acidic ribosomal protein P2 OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   16 MKVVAAYPLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 201
            MK +AAY L  LGGNTSPSA D+K +L SVG D +++RL  L+SE++GKDI +LIA G EKL
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLTSVGIDADEDRLNKLISELEGKDIQQLIAEGSEKL 62          
BLAST of CF832236 vs. ExPASy Swiss-Prot
Match: RLA2_CLAHE (60S acidic ribosomal protein P2 OS=Cladosporium herbarum GN=CLAH5 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.090e-12
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   16 MKVVAAYPLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 201
            MK +AA+ L  L GN+SPSA+DIK +L SVG D ++ RL  LL E++GKDI ELI+SG EKL
Sbjct:    1 MKYLAAFLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKL 62          
The following BLAST results are available for this feature:
BLAST of CF832236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RLA2_PARAR7.795e-1972.5860S acidic ribosomal protein P2 OS=Parthenium arge... [more]
RLA2B_MAIZE1.018e-1846.0260S acidic ribosomal protein P2B OS=Zea mays GN=RP... [more]
RLA22_ARATH4.277e-1772.5860S acidic ribosomal protein P2-2 OS=Arabidopsis t... [more]
RLA24_ARATH9.529e-1770.9760S acidic ribosomal protein P2-4 OS=Arabidopsis t... [more]
RLA21_ARATH9.529e-1770.9760S acidic ribosomal protein P2-1 OS=Arabidopsis t... [more]
RLA2A_MAIZE1.054e-1545.1360S acidic ribosomal protein P2A OS=Zea mays GN=RP... [more]
RLA2_BRAFL5.228e-1566.1360S acidic ribosomal protein P2 OS=Branchiostoma f... [more]
RLA2_ALTAL1.987e-1441.5960S acidic ribosomal protein P2 OS=Alternaria alte... [more]
RLA2_FUSCU2.869e-1361.2960S acidic ribosomal protein P2 OS=Fusarium culmor... [more]
RLA2_CLAHE1.090e-1259.6860S acidic ribosomal protein P2 OS=Cladosporium he... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832236 ID=CF832236; Name=CF832236; organism=Citrus sinensis; type=EST; length=672bp
CTCCCGAGAAAGAAAATGAAGGTGGTGGCAGCATATCCGTTGGCTGTTTT
GGGAGGAAACACCAGCCCTTCCGCCGATGATATTAAGGGAATCCTTGGCT
CTGTTGGAGCTGATTGCGAGGACAATAGGCTTGAGCTCCTTCTATCAGAA
GTTAAAGGCAAAGACATAACTGAGCTTATTGCATCTGGGCGGGAGAAATT
GGCCTCAGTGCCTTCTGGTGGTGGAGTTGCAGTTGCTGCTGCTCCATCTG
CCGGTGGTGCAGGCGCTGCCCCAGCTGCTGCTGAGGCCAAGAAAGAGGAG
AAAGTGGAGGAGAAAGAAGAATCTGATGATGATATGGGTTTCAGTCTTTT
CGACTAGAGAGCTCTTCAGCATTTTTTTCACCTCTTTCTCCTCAATTGGG
AGCTTCTAACTGGACTTAAAAGTTTTGTTATTTTGGAGTTCTGTAGTTTT
TAGTTTATATAATCCTTAGATGAAACTTTTGACGGGTTAAGTTGTGGCTC
CATATTGATATGCTGCTTTGTTATGCCTGTTCAGAGATTTATATATCTGG
CAACTATCATTTTCTATTATTTCATCATACAAATGACTCCATGGATGTTT
CTGTCAGAAGTTTAGATCCATTCCATGTTCTGCTTGAATGGAAACATATG
CAATTGAAAAAAAAAAAAAAAA
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