CF832237

Overview
NameCF832237
Unique NameCF832237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6048 contig Csv1_Contig6048:29..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.203e-19
Identity = 46/62 (74.19%), Postives = 58/62 (93.55%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MKV+AA+LLA+LGGNTSP+ +D+K IL SVGAD +D+++ELLLS+VKGKDITELIASGRE+L
Sbjct:    1 MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRERL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.268e-18
Identity = 44/62 (70.97%), Postives = 56/62 (90.32%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MKV+AAYLLAVLGGNTSP+ADD+K IL SVGA+ ++ +LE LL+E+K KDITE+IA+GRE+L
Sbjct:    1 MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRERL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MKVVAAYLLAVL G  SP++ DIK ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GREKL
Sbjct:    1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.470e-17
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MKV AA+LLAVLGGN +PSAD+IK I+G+VGAD +   +ELLL EV GKDI ELIASGREKL
Sbjct:    1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.470e-17
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MKVVAA+LLAVL G  SP+  DIK ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GREKL
Sbjct:    1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = -2
Query:  481 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREK 663
            MK VAAYLLAVL GN SPSADD+  IL SVG + ++ ++ELLLS++ GKDITELIA+GREK
Sbjct:    1 MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGREK 61          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_BRAFL (60S acidic ribosomal protein P2 OS=Branchiostoma floridae PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.066e-16
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            M+ VAAYLLAVLGGN +PSA DIK ILGSVG D ED RL  ++ E+KGKDI E++A+GR KL
Sbjct:    1 MRYVAAYLLAVLGGNANPSAGDIKKILGSVGIDAEDERLNKVIGELKGKDIEEVMAAGRGKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_ALTAL (60S acidic ribosomal protein P2 OS=Alternaria alternata GN=ALTA5 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MK +AAYLL  LGGNTSPSA D+K +L SVG + + +RL+ L+SE++GKDI ELIASG EKL
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_FUSCU (60S acidic ribosomal protein P2 OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MK +AAYLL  LGGNTSPSA D+K +L SVG D +++RL  L+SE++GKDI +LIA G EKL
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLTSVGIDADEDRLNKLISELEGKDIQQLIAEGSEKL 62          
BLAST of CF832237 vs. ExPASy Swiss-Prot
Match: RLA2_CLAHE (60S acidic ribosomal protein P2 OS=Cladosporium herbarum GN=CLAH5 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = -2
Query:  478 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 663
            MK +AA+LL  L GN+SPSA+DIK +L SVG D ++ RL  LL E++GKDI ELI+SG EKL
Sbjct:    1 MKYLAAFLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKL 62          
The following BLAST results are available for this feature:
BLAST of CF832237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RLA2_PARAR1.203e-1974.1960S acidic ribosomal protein P2 OS=Parthenium arge... [more]
RLA2B_MAIZE2.268e-1870.9760S acidic ribosomal protein P2B OS=Zea mays GN=RP... [more]
RLA22_ARATH6.599e-1874.1960S acidic ribosomal protein P2-2 OS=Arabidopsis t... [more]
RLA24_ARATH1.470e-1772.5860S acidic ribosomal protein P2-4 OS=Arabidopsis t... [more]
RLA21_ARATH1.470e-1772.5860S acidic ribosomal protein P2-1 OS=Arabidopsis t... [more]
RLA2A_MAIZE3.621e-1668.8560S acidic ribosomal protein P2A OS=Zea mays GN=RP... [more]
RLA2_BRAFL8.066e-1667.7460S acidic ribosomal protein P2 OS=Branchiostoma f... [more]
RLA2_ALTAL1.521e-1464.5260S acidic ribosomal protein P2 OS=Alternaria alte... [more]
RLA2_FUSCU4.426e-1462.9060S acidic ribosomal protein P2 OS=Fusarium culmor... [more]
RLA2_CLAHE1.682e-1361.2960S acidic ribosomal protein P2 OS=Cladosporium he... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832237 ID=CF832237; Name=CF832237; organism=Citrus sinensis; type=EST; length=673bp
TCGAGTTTTTTCCTTTTTTTTTTCATTGCATATGTTTCCATTCAAGCAGA
ACATGGAATGGATCTAAACTTCTGACAGAAACATCCATGGAGTCATTTGT
ATGATGAAATAATAGAAAATGATAGTTGCCAGATATATAAATCTCTGAAC
AGGCATAACAAAGCAGCATATCAATATGGAGCCACAACTTAACCCGTCAA
AAGTTTCATCTAAGGATTATATAAACTAAAAACTACAGAACTCCAAAATA
ACAAAACTTTTAAGTCCAGTTAGAAGCTCCCAATTGAGGAGAAAGAGGTG
AAAAAAATGCTGAAGAGCTCTCTAGTCGAAAAGACTGAAACCCATATCAT
CATCAGATTCTTCTTTCTCCTCCACTTTCTCCTCTTTCTTGGCCTCAGCA
GCAGCTGGGGCAGCGCCTGCACCACCGGCAGATGGAGCATCAGCAACTGC
AACTCCACCACCAGAAGGCACTGAGGCCAATTTCTCCCGCCCAGATGCAA
TAAGCTCAGTTATGTCTTTGCCTTTAACTTCTGATAGAAGGAGCTCAAGC
CTATTGTCCTCGCAATCAGCTCCAACAGAGCCAAGGATTCCCTTAATATC
ATCGGCGGAAGGGCTGGTGTTTCCTCCCAAAACAGCCAACAGATATGCTG
CCACCACCTTCATTTCTTCTTTC
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